| Protein: | TRM82 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 444 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRM82.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..439] | [1049..1487] |
|
|
0.0 | [12..436] | [830..1251] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MSVIHPLQNL LTSRDGSLVF AIIKNCILSF KYQSPNHWEF AGKWSDDFDK IQESRNTTAK 60
61 EQQGQSSENE NENKKLKSNK GDSIKRTAAK
|
| Detection Method: |  |
| Confidence: | 58.522879 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [91-444] |
1 11 21 31 41 51
| | | | | |
1 VPSPGLGAPP IYSYIRNLRL TSDESRLIAC ADSDKSLLVF DVDKTSKNVL KLRKRFCFSK 60
61 RPNAISIAED DTTVIIADKF GDVYSIDINS IPEEKFTQEP ILGHVSMLTD VHLIKDSDGH 120
121 QFIITSDRDE HIKISHYPQC FIVDKWLFGH KHFVSSICCG KDYLLLSAGG DDKIFAWDWK 180
181 TGKNLSTFDY NSLIKPYLND QHLAPPRFQN ENNDIIEFAV SKIIKSKNLP FVAFFVEATK 240
241 CIIILEMSEK QKGDLALKQI ITFPYNVISL SAHNDEFQVT LDNKESSGVQ KNFAKFIEYN 300
301 LNENSFVVNN EKSNEFDSAI IQSVQGDSNL VTKKEEIYPL YNVSSLRKHG EHYS
|
| Detection Method: | |
| Confidence: | 77.09691 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.83286470399158 | bayes_pls_golite062009 |
| 1.56935945513861 | bayes_pls_golite062009 | |
| RNA binding | 1.50295916950465 | bayes_pls_golite062009 |
| transcription regulator activity | 1.25687092973217 | bayes_pls_golite062009 |
| snoRNA binding | 1.22055760394426 | bayes_pls_golite062009 |
| nucleic acid binding | 1.20712373307552 | bayes_pls_golite062009 |
| protein binding | 0.969160695900395 | bayes_pls_golite062009 |
| ligase activity | 0.93058496790047 | bayes_pls_golite062009 |
| DNA binding | 0.711274653406079 | bayes_pls_golite062009 |
| histone methyltransferase activity | 0.441825675082113 | bayes_pls_golite062009 |
| protein methyltransferase activity | 0.246495665330495 | bayes_pls_golite062009 |
| transcription factor activity | 0.243992994917491 | bayes_pls_golite062009 |
| N-methyltransferase activity | 0.00335766408304172 | bayes_pls_golite062009 |
