| Protein: | FOB1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 566 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FOB1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..566] | [1..566] |
|
Region A: Residues: [1-566] |
1 11 21 31 41 51
| | | | | |
1 MTKPRYNDVL FDDDDSVPSE SVTRKSQRRK ATSPGESRES SKDRLLILPS MGESYTEYVD 60
61 SYLNLELLER GERETPIFLE SLTRQLTQKI YELIKTKSLT ADTLQQISDK YDGVVAENKL 120
121 LFLQRQYYVD DEGNVRDGRN NDKIYCEPKH VYDMVMATHL MNKHLRGKTL HSFLFSHFAN 180
181 ISHAIIDWVQ QFCSKCNKKG KIKPLKEYKR PDMYDKLLPM ERIHIEVFEP FNGEAIEGKY 240
241 SYVLLCRDYR SSFMWLLPLK STKFKHLIPV VSSLFLTFAR VPIFVTSSTL DKDDLYDICE 300
301 EIASKYGLRI GLGLKSSARF HTGGILCIQY ALNSYKKECL ADWGKCLRYG PYRFNRRRNK 360
361 RTKRKPVQVL LSEVPGHNAK FETKRERVIE NTYSRNMFKM AGGKGLIYLE DVNTFALANE 420
421 ADNSCNNNGI LHNNNIGNDN FEEEVQKQFD LTEKNYIDEY DDLAHDSSEG EFEPNTLTPE 480
481 EKPPHNVDED RIESTGVAAP MQGTEEPEKG DQKESDGASQ VDQSVEITRP ETSYYQTLES 540
541 PSTKRQKLDQ QGNGDQTRDF GTSMEL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [131-484] |
1 11 21 31 41 51
| | | | | |
1 DEGNVRDGRN NDKIYCEPKH VYDMVMATHL MNKHLRGKTL HSFLFSHFAN ISHAIIDWVQ 60
61 QFCSKCNKKG KIKPLKEYKR PDMYDKLLPM ERIHIEVFEP FNGEAIEGKY SYVLLCRDYR 120
121 SSFMWLLPLK STKFKHLIPV VSSLFLTFAR VPIFVTSSTL DKDDLYDICE EIASKYGLRI 180
181 GLGLKSSARF HTGGILCIQY ALNSYKKECL ADWGKCLRYG PYRFNRRRNK RTKRKPVQVL 240
241 LSEVPGHNAK FETKRERVIE NTYSRNMFKM AGGKGLIYLE DVNTFALANE ADNSCNNNGI 300
301 LHNNNIGNDN FEEEVQKQFD LTEKNYIDEY DDLAHDSSEG EFEPNTLTPE EKPP
|
| Detection Method: | |
| Confidence: | 5.37 |
| Match: | 1k6yA |
| Description: | N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| exonuclease activity | 2.69169803889636 | bayes_pls_golite062009 |
| nuclease activity | 2.63308556411438 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 2.43802973446357 | bayes_pls_golite062009 |
| transcription regulator activity | 2.22832306273638 | bayes_pls_golite062009 |
| ribonuclease activity | 2.21640837000075 | bayes_pls_golite062009 |
| nucleic acid binding | 2.15202443486046 | bayes_pls_golite062009 |
| DNA binding | 1.88388568255929 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 1.66403897673963 | bayes_pls_golite062009 |
| DNA polymerase activity | 1.57871253412659 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 1.54823157746404 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 1.44766638837068 | bayes_pls_golite062009 |
| binding | 1.42021256417703 | bayes_pls_golite062009 |
| transcription factor activity | 1.18792852183348 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 1.16950079926796 | bayes_pls_golite062009 |
| catalytic activity | 1.16880796007849 | bayes_pls_golite062009 |
| hydrolase activity | 1.02227964399726 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 1.01792206204118 | bayes_pls_golite062009 |
| exoribonuclease activity | 0.985835839433199 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 0.91438167081716 | bayes_pls_golite062009 |
| deoxyribonuclease activity | 0.819269466567015 | bayes_pls_golite062009 |
| endonuclease activity | 0.591008475846166 | bayes_pls_golite062009 |
| 0.300511724300705 | bayes_pls_golite062009 | |
| endoribonuclease activity, producing 5'-phosphomonoesters | 0.244405458380391 | bayes_pls_golite062009 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.152950127352174 | bayes_pls_golite062009 |
| transcription activator activity | 0.0924765766526223 | bayes_pls_golite062009 |
| protein binding | 0.0799098348667361 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.056513663571923 | bayes_pls_golite062009 |
|
Region A: Residues: [485-566] |
1 11 21 31 41 51
| | | | | |
1 HNVDEDRIES TGVAAPMQGT EEPEKGDQKE SDGASQVDQS VEITRPETSY YQTLESPSTK 60
61 RQKLDQQGNG DQTRDFGTSM EL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
