YRC Public Data Repository - Protein Structure Prediction

Protein:	GSG1
Organism:	Saccharomyces cerevisiae
Length:	698 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSG1.

Description	E-value	Query Range	Subject Range
gi\|849131 - gi\|849131\|gb\|AAB03360.1\| Gsg1p	1215.0	[0..1]	[698..1]
gi\|50285229, gi\|... - gi\|50285229\|ref\|XP_445043.1\| unnamed protein product [Candida glabrata], gi\|49524346\|emb\|CAG57943.1\|... gi\|49524346 - gi\|49524346\|emb\|CAG57943.1\| unnamed protein product [Candida glabrata]	757.0	[0..1]	[673..1]
TR852_SCHPO - Transport protein particle subunit trs85-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN... SPBC1734.07c - TRAPP complex subunit Trs85	456.0	[0..197]	[637..186]
gi\|44986045 - gi\|44986045\|gb\|AAS54585.1\| AGR096Cp [Ashbya gossypii ATCC 10895] gi\|44986045, gi\|... - gi\|45201191\|ref\|NP_986761.1\| AGR096Cp [Ashbya gossypii ATCC 10895], gi\|44986045\|gb\|AAS54585.1\| AGR09...	426.0	[0..2]	[669..1]
gi\|50311799, gi\|... - gi\|50311799\|ref\|XP_455930.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645066\|emb\|CAG9863... gi\|49645066 - gi\|49645066\|emb\|CAG98638.1\| KLLA0F18953p [Kluyveromyces lactis]	406.0	[0..3]	[658..5]
gi\|9755838, gi\|1... - gi\|9755838\|emb\|CAC01869.1\| putative protein [Arabidopsis thaliana], gi\|15237319\|ref\|NP_197132.1\| unk...	352.0	[0..187]	[495..129]
gi\|111063006, gi... - gi\|169611688\|ref\|XP_001799262.1\| hypothetical protein SNOG_08958 [Phaeosphaeria nodorum SN15], gi\|11...	277.0	[0..124]	[654..187]
gi\|46116848, gi\|... - gi\|46116848\|ref\|XP_384442.1\| hypothetical protein FG04266.1 [Gibberella zeae PH-1], gi\|42550749\|gb\|E...	259.0	[0..34]	[661..115]
gi\|90298622, gi\|... - gi\|90298622\|gb\|EAS28253.1\| hypothetical protein CIMG_09457 [Coccidioides immitis RS], gi\|119175108\|r...	256.0	[0..186]	[655..226]

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Predicted Domain #1

Region A:
Residues: [1-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFSYEHYMN LLFHLDNSKE TVPPEIAKRI ISNAIAPVIT VTSTPLFDKH IQETYKVDSL  60
   61 YMLLRFFGGC VSDRDQANEA KVGQHEHEVC DASDSTDSIP KNKNLEVPNL SKKGSRSRSN 120
  121 SLFQRDSTQS QYIRFTRPLG DLIETRDAND MLFNYHSLEV FLDNYLKLVA ANTDEMVPHN 180
  181 LLKKSIYHSF FSLAISSTNN LSPYETFNHP ILSLIALDIS NGEVYEDARD LLVNFKNLNH 240
  241 NTENFPIFMN TNEMLPVFLL CYNDDSQEEF EKCQALAKKL KKQLFVESIL LALWKDSFIY 300
  301 DENSVIQLHQ PVMSSLEEIL FFLQAPT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [328-500]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTTLSLALIN SIYDMLDYLV YDLMIPFMKR KVSFWEETIL QPRKSLFNGA KFFKKFMNKN  60
   61 PVNGNHQHNS LTRDSQGNEY FASSSSEFLM RKLADWSMML SDFKTAYSTY ESLMDDLDAF 120
  121 PKYLASCIEW CAVSLLMGAQ SIVTVKMIKN DINPLIERAL ATYENCSRIQ RGK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [501-698]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKESNSLDVT EPVRSYETRC MILASELFLS LSNTWTSTPY AIQYLETILD ECKLGPCSQI  60
   61 MVWERLSDCY NLRVDPRIKH RVGAMKKDAK DTEDLRGEHK YSTDHFTDED ILSEGLTRRR 120
  121 KAAFFRLIAA KKWAEQKQWR QVSWCLKDIE STYSEIKFLH GNGLILSKLK NQLNLKDVDS 180
  181 APRPSEKNLT RTSVSFIG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits