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View Structure Prediction Details

Protein: GSG1
Organism: Saccharomyces cerevisiae
Length: 698 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSG1.

Description E-value Query
Range
Subject
Range
gi|849131 - gi|849131|gb|AAB03360.1| Gsg1p
1215.0 [0..1] [698..1]
gi|50285229, gi|... - gi|50285229|ref|XP_445043.1| unnamed protein product [Candida glabrata], gi|49524346|emb|CAG57943.1|...
gi|49524346 - gi|49524346|emb|CAG57943.1| unnamed protein product [Candida glabrata]
757.0 [0..1] [673..1]
TR852_SCHPO - Transport protein particle subunit trs85-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN...
SPBC1734.07c - TRAPP complex subunit Trs85
456.0 [0..197] [637..186]
gi|44986045 - gi|44986045|gb|AAS54585.1| AGR096Cp [Ashbya gossypii ATCC 10895]
gi|44986045, gi|... - gi|45201191|ref|NP_986761.1| AGR096Cp [Ashbya gossypii ATCC 10895], gi|44986045|gb|AAS54585.1| AGR09...
426.0 [0..2] [669..1]
gi|50311799, gi|... - gi|50311799|ref|XP_455930.1| unnamed protein product [Kluyveromyces lactis], gi|49645066|emb|CAG9863...
gi|49645066 - gi|49645066|emb|CAG98638.1| KLLA0F18953p [Kluyveromyces lactis]
406.0 [0..3] [658..5]
gi|9755838, gi|1... - gi|9755838|emb|CAC01869.1| putative protein [Arabidopsis thaliana], gi|15237319|ref|NP_197132.1| unk...
352.0 [0..187] [495..129]
gi|111063006, gi... - gi|169611688|ref|XP_001799262.1| hypothetical protein SNOG_08958 [Phaeosphaeria nodorum SN15], gi|11...
277.0 [0..124] [654..187]
gi|46116848, gi|... - gi|46116848|ref|XP_384442.1| hypothetical protein FG04266.1 [Gibberella zeae PH-1], gi|42550749|gb|E...
259.0 [0..34] [661..115]
gi|90298622, gi|... - gi|90298622|gb|EAS28253.1| hypothetical protein CIMG_09457 [Coccidioides immitis RS], gi|119175108|r...
256.0 [0..186] [655..226]

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Predicted Domain #1
Region A:
Residues: [1-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFSYEHYMN LLFHLDNSKE TVPPEIAKRI ISNAIAPVIT VTSTPLFDKH IQETYKVDSL  60
   61 YMLLRFFGGC VSDRDQANEA KVGQHEHEVC DASDSTDSIP KNKNLEVPNL SKKGSRSRSN 120
  121 SLFQRDSTQS QYIRFTRPLG DLIETRDAND MLFNYHSLEV FLDNYLKLVA ANTDEMVPHN 180
  181 LLKKSIYHSF FSLAISSTNN LSPYETFNHP ILSLIALDIS NGEVYEDARD LLVNFKNLNH 240
  241 NTENFPIFMN TNEMLPVFLL CYNDDSQEEF EKCQALAKKL KKQLFVESIL LALWKDSFIY 300
  301 DENSVIQLHQ PVMSSLEEIL FFLQAPT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [328-500]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTTLSLALIN SIYDMLDYLV YDLMIPFMKR KVSFWEETIL QPRKSLFNGA KFFKKFMNKN  60
   61 PVNGNHQHNS LTRDSQGNEY FASSSSEFLM RKLADWSMML SDFKTAYSTY ESLMDDLDAF 120
  121 PKYLASCIEW CAVSLLMGAQ SIVTVKMIKN DINPLIERAL ATYENCSRIQ RGK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.748 N/A N/A d.67.3 Ribosome recycling factor, RRF
View Download 0.712 N/A N/A d.67.3 Ribosome recycling factor, RRF
View Download 0.708 N/A N/A d.67.3 Ribosome recycling factor, RRF
View Download 0.684 N/A N/A a.25.1 Ferritin-like
View Download 0.613 N/A N/A d.67.3 Ribosome recycling factor, RRF
View Download 0.593 N/A N/A a.78.1 Fatty acid responsive transcription factor FadR, C-terminal domain
View Download 0.593 N/A N/A a.78.1 Fatty acid responsive transcription factor FadR, C-terminal domain
View Download 0.537 N/A N/A a.118.13 Arp2/3 complex 16 kDa subunit ARPC5
View Download 0.519 N/A N/A a.25.1 Ferritin-like
View Download 0.314 N/A N/A a.25.1 Ferritin-like

Predicted Domain #3
Region A:
Residues: [501-698]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKESNSLDVT EPVRSYETRC MILASELFLS LSNTWTSTPY AIQYLETILD ECKLGPCSQI  60
   61 MVWERLSDCY NLRVDPRIKH RVGAMKKDAK DTEDLRGEHK YSTDHFTDED ILSEGLTRRR 120
  121 KAAFFRLIAA KKWAEQKQWR QVSWCLKDIE STYSEIKFLH GNGLILSKLK NQLNLKDVDS 180
  181 APRPSEKNLT RTSVSFIG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.406 f.1.3 delta-Endotoxin (insectocide), N-terminal domain
View Download 0.397 a.118.16 Testis/brain RNA-binding protein (TB-RBP)
View Download 0.389 a.118.1 ARM repeat
View Download 0.370 a.287.1 Description not found.
View Download 0.359 a.118.16 Testis/brain RNA-binding protein (TB-RBP)
View Download 0.337 f.1.3 delta-Endotoxin (insectocide), N-terminal domain
View Download 0.326 a.95.1 Influenza virus matrix protein M1
View Download 0.326 a.95.1 Influenza virus matrix protein M1
View Download 0.315 f.1.3 delta-Endotoxin (insectocide), N-terminal domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle