| Protein: | NHP10 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 203 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NHP10.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-37 | [3..162] | [170..343] |
|
|
3.0E-37 | [3..162] | [162..335] |
|
|
7.0E-35 | [7..201] | [20..225] |
|
|
1.0E-34 | [7..201] | [20..220] |
|
|
5.0E-34 | [3..168] | [1..173] |
|
|
2.0E-33 | [7..201] | [20..220] |
|
Region A: Residues: [1-77] |
1 11 21 31 41 51
| | | | | |
1 MSVEEKKRRL EELKDQNVVL GLAIQRSRLS VKRLKLEYGV LLERLESRIE LDPELNCEDP 60
61 LPTLASFKQE LLTKPFR
|
| Detection Method: |  |
| Confidence: | 8.045757 |
| Match: | 1aab__ |
| Description: | HMG1, domains A and B |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.47326864033978 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.71554076177339 | bayes_pls_golite062009 |
| DNA binding | 2.47408268953466 | bayes_pls_golite062009 |
| nucleic acid binding | 2.43458430104304 | bayes_pls_golite062009 |
| transcription regulator activity | 1.94466966241938 | bayes_pls_golite062009 |
| transcription factor binding | 1.70152980531918 | bayes_pls_golite062009 |
| chromatin binding | 1.63780144452084 | bayes_pls_golite062009 |
| transcription activator activity | 1.44874740508684 | bayes_pls_golite062009 |
| transcription repressor activity | 1.4027949566969 | bayes_pls_golite062009 |
| protein binding | 1.33904668423876 | bayes_pls_golite062009 |
| transcription factor activity | 1.12823770442876 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.837636448794941 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.67573816815318 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.341133967674497 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.113222211905324 | bayes_pls_golite062009 |
|
Region A: Residues: [78-203] |
1 11 21 31 41 51
| | | | | |
1 KSKTKRHKVK ERDPNMPKRP TNAYLLYCEM NKERIRQNGS LDVTRDLAEG WKNLNEQDRK 60
61 PYYKLYSEDR ERYQMEMEIY NKKISNIDAD DDKEENEQKI KNNEEGSSTK VADSKGGEDG 120
121 SLVSSN
|
| Detection Method: | |
| Confidence: | 73.69897 |
| Match: | 1cg7A_ |
| Description: | NHP6a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.47326864033978 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.71554076177339 | bayes_pls_golite062009 |
| DNA binding | 2.47408268953466 | bayes_pls_golite062009 |
| nucleic acid binding | 2.43458430104304 | bayes_pls_golite062009 |
| transcription regulator activity | 1.94466966241938 | bayes_pls_golite062009 |
| transcription factor binding | 1.70152980531918 | bayes_pls_golite062009 |
| chromatin binding | 1.63780144452084 | bayes_pls_golite062009 |
| transcription activator activity | 1.44874740508684 | bayes_pls_golite062009 |
| transcription repressor activity | 1.4027949566969 | bayes_pls_golite062009 |
| protein binding | 1.33904668423876 | bayes_pls_golite062009 |
| transcription factor activity | 1.12823770442876 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.837636448794941 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.67573816815318 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.341133967674497 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.113222211905324 | bayes_pls_golite062009 |
