| Protein: | RRP43 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 394 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRP43.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..394] | [1..394] |
|
|
7.0E-11 | [12..250] | [7..184] |
|
Region A: Residues: [1-277] |
1 11 21 31 41 51
| | | | | |
1 MAESTTLETI EIHPITFPPE VLARISPELS LQRHLSLGIR PCLRKYEEFR DVAIENNTLS 60
61 RYADAGNIDT KNNILGSNVL KSGKTIVITS ITGGIIEETS AAIKDLDDFG EEELFEVTKE 120
121 EDIIANYASV YPVVEVERGR VGACTDEEMT ISQKLHDSIL HSRILPKKAL KVKAGVRSAN 180
181 EDGTFSVLYP DELEDDTLNE TNLKMKRKWS YVLYAKIVVL SRTGPVFDLC WNSLMYALQS 240
241 VKLPRAFIDE RASDLRMTIR TRGRSATIRE TYEIICD
|
| Detection Method: |  |
| Confidence: | 42.026872 |
| Match: | PF01138 |
| Description: | 3' exoribonuclease family, domain 1 |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| ribonuclease activity | 7.23127959979732 | bayes_pls_golite062009 |
| exoribonuclease activity | 7.1818107582098 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 7.15162444368945 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 6.07082095113089 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 3.97196194079029 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 3.56720447478991 | bayes_pls_golite062009 |
| exonuclease activity | 3.17253431625181 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 2.74672075915955 | bayes_pls_golite062009 |
| RNA binding | 1.95606366707311 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.71911386517518 | bayes_pls_golite062009 |
| structural molecule activity | 1.54100243929123 | bayes_pls_golite062009 |
| hydrolase activity | 1.48006994106758 | bayes_pls_golite062009 |
| transcription regulator activity | 1.21692959363145 | bayes_pls_golite062009 |
| nucleic acid binding | 1.06421277984865 | bayes_pls_golite062009 |
| mRNA binding | 1.04070984651466 | bayes_pls_golite062009 |
| binding | 0.958185654055629 | bayes_pls_golite062009 |
| DNA binding | 0.849730288865394 | bayes_pls_golite062009 |
| catalytic activity | 0.832312651473597 | bayes_pls_golite062009 |
| nuclease activity | 0.455660692064928 | bayes_pls_golite062009 |
|
Region A: Residues: [278-394] |
1 11 21 31 41 51
| | | | | |
1 QTKSVPLMIN AKNIAFASNY GIVELDPECQ LQNSDNSEEE EVDIDMDKLN TVLIADLDTE 60
61 AEETSIHSTI SILAAPSGNY KQLTLVGGGA KITPEMIKRS LLLSRVRADD LSTRFNI
|
| Detection Method: | |
| Confidence: | 14.455932 |
| Match: | PF03725 |
| Description: | 3' exoribonuclease family, domain 2 |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
