| Protein: | APA1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 321 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APA1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..321] | [1..321] |
|
|
0.0 | [1..321] | [1..321] |
|
|
0.0 | [4..321] | [3..331] |
|
|
2.0E-65 | [4..294] | [12..289] |
|
|
2.0E-56 | [91..285] | [108..279] |
|
|
0.005 | [64..163] | [2..99] |
|
|
0.008 | [114..185] | [141..213] |
|
Region A: Residues: [1-185] |
1 11 21 31 41 51
| | | | | |
1 MSIPADIASL ISDKYKSAFD NGNLKFIQTE TTKTKDPKTS MPYLISHMPS LIEKPERGQT 60
61 PEGEDPLGKP EEELTVIPEF GGADNKAYKL LLNKFPVIPE HTLLVTNEYQ HQTDALTPTD 120
121 LLTAYKLLCA LDNEESDKRH MVFYNSGPAS GSSLDHKHLQ ILQMPEKFVT FQDRLCNGKE 180
181 HFLPT
|
| Detection Method: |  |
| Confidence: | 7.22 |
| Match: | 1gupA |
| Description: | Galactose-1-phosphate uridylyltransferase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 1.74990165024183 | bayes_pls_golite062009 |
| binding | 1.71599870633602 | bayes_pls_golite062009 |
| hydrolase activity | 0.690968602046843 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.342529552808262 | bayes_pls_golite062009 |
| protein binding | 0.315946879872005 | bayes_pls_golite062009 |
| catalytic activity | 0.096119422680995 | bayes_pls_golite062009 |
|
Region A: Residues: [186-321] |
1 11 21 31 41 51
| | | | | |
1 FNTEPLQDAK VSFAHFVLPM PESEETVDED LLAMCYISIL QRALTFFQDW LNENPELKKS 60
61 YNLMLTKEWI CVVPRSKAFS DEMKIGFNST GYCGMILTKN DEVFSKITEK PELINDILLE 120
121 CGFPNTSGQK PNEYNY
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.382 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.542 | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.382 | a.74.1 | Cyclin-like |
| View | Download | 0.367 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.373 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.353 | d.110.4 | SNARE-like |
| View | Download | 0.349 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.347 | d.89.1 | Origin of replication-binding domain, RBD-like |
| View | Download | 0.346 | a.24.3 | Cytochromes |
| View | Download | 0.333 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.331 | d.202.1 | Transcription factor NusA, N-terminal domain |
| View | Download | 0.323 | d.218.1 | Nucleotidyltransferase |
| View | Download | 0.317 | d.130.1 | S-adenosylmethionine synthetase |
| View | Download | 0.304 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.295 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.294 | a.1.1 | Globin-like |
| View | Download | 0.286 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.280 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.266 | d.185.1 | LuxS/MPP-like metallohydrolase |
| View | Download | 0.262 | a.118.1 | ARM repeat |
| View | Download | 0.261 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.259 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.247 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.242 | a.25.1 | Ferritin-like |
| View | Download | 0.237 | d.6.1 | Prion-like |
| View | Download | 0.235 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.235 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.230 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.226 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.221 | a.39.1 | EF-hand |
| View | Download | 0.219 | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.214 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
