| Protein: | LSB5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 354 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSB5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..354] | [1..354] |
|
|
0.0 | [1..354] | [1..303] |
|
|
3.0E-71 | [172..354] | [30..212] |
|
Region A: Residues: [1-91] |
1 11 21 31 41 51
| | | | | |
1 MGFLSDHPHT AITETIFRIV SSRDYTLEVE LAPLIQLIKA DHNDYNYTVN QEEAARALRK 60
61 KIKYGNRLQQ SRTLDLLDLF ISQGVKFTVM Y
|
| Detection Method: |  |
| Confidence: | 14.86 |
| Match: | 1jwfA |
| Description: | ADP-ribosylation factor binding protein Gga1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| clathrin binding | 2.2051555354265 | bayes_pls_golite062009 |
| binding | 2.04296681309629 | bayes_pls_golite062009 |
| protein binding | 1.8451435695957 | bayes_pls_golite062009 |
| phosphatidylinositol-4,5-bisphosphate binding | 0.913711498494864 | bayes_pls_golite062009 |
| phospholipid binding | 0.583709100639576 | bayes_pls_golite062009 |
| phosphoinositide binding | 0.562042231995162 | bayes_pls_golite062009 |
|
Region A: Residues: [92-168] |
1 11 21 31 41 51
| | | | | |
1 NDDKLLQRLR GMATNSENSG SGEKYEPRII KKCAAYAISW LNYITQNNLE NARAYSGLYQ 60
61 LGQTVKQRYS KSSRSRR
|
| Detection Method: | |
| Confidence: | 14.86 |
| Match: | 1jwfA |
| Description: | ADP-ribosylation factor binding protein Gga1 |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| clathrin binding | 3.56527129767546 | bayes_pls_golite062009 |
| binding | 1.9253053687392 | bayes_pls_golite062009 |
| phosphatidylinositol-4,5-bisphosphate binding | 1.88822455907721 | bayes_pls_golite062009 |
| protein binding | 1.65824069417195 | bayes_pls_golite062009 |
| phosphoinositide binding | 1.30275072241927 | bayes_pls_golite062009 |
| phospholipid binding | 1.04623877187105 | bayes_pls_golite062009 |
| lipid binding | 0.447565169704067 | bayes_pls_golite062009 |
|
Region A: Residues: [169-354] |
1 11 21 31 41 51
| | | | | |
1 SGGGSGGRSN FMDDSADDTL YQSNSLTSAD RLYRIPQINM NKEAPRIRLI ISDALASAVS 60
61 LQNSLIGLPK GKFSTDDEEA TSKFIQARAI RRKVLRYLQL VTEGEFLGSL IHANDELVAA 120
121 LTAYDDRSAQ DDSSDESDHG SYDDGIYDEN EQDNSRYIDS ESSEEESLSS YQPSTISNPF 180
181 GDHNKI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
