YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPS9
Organism:	Saccharomyces cerevisiae
Length:	278 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPS9.

Description	E-value	Query Range	Subject Range
RT09_YEAST - 37S ribosomal protein S9, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... MRPS9 - Mitochondrial ribosomal protein of the small subunit	2.0E-89	[1..278]	[1..278]
RT09_KLUMA - 37S ribosomal protein S9, mitochondrial OS=Kluyveromyces marxianus GN=MRPS9 PE=3 SV=1	2.0E-82	[1..278]	[1..292]
RT09_CANAL - 40S ribosomal protein S9, mitochondrial OS=Candida albicans GN=MRPS9 PE=2 SV=1 RT09_CANAL - 37S ribosomal protein S9, mitochondrial OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MRPS9...	1.0E-77	[6..278]	[58..336]
gi\|220949328 - gi\|220949328\|gb\|ACL87207.1\| mRpS9-PA [synthetic construct] mRpS9-PA - The gene mitochondrial ribosomal protein S9 is referred to in FlyBase by the symbol Dmel\mRpS9 (CG29...	1.0E-69	[9..278]	[119..395]
CE24890 - status:Confirmed UniProt:P34388 protein_id:AAK84520.1	7.0E-64	[10..278]	[337..633]
RS9_RHIME - 30S ribosomal protein S9 OS=Rhizobium meliloti (strain 1021) GN=rpsI PE=3 SV=1 RS9_RHIME - 30S ribosomal protein S9 OS=Rhizobium meliloti GN=rpsI PE=3 SV=1	1.0E-48	[131..278]	[8..155]
RS9_CAUCR - 30S ribosomal protein S9 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rpsI PE=3 SV=1 RS9_CAUCR - 30S ribosomal protein S9 OS=Caulobacter crescentus GN=rpsI PE=3 SV=1 RS9_CAUCN - 30S ribosomal protein S9 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsI PE=3 SV=1	7.0E-48	[135..278]	[14..157]
RS9_AGRFC - 30S ribosomal protein S9 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rpsI PE=3 SV=1 gi\|25294629, gi\|... - gi\|25294633\|pir\|\|AI2729 30S ribosomal protein S9 [imported] - Agrobacterium tumefaciens (strain C58,...	2.0E-47	[137..278]	[14..155]
RS9_LISMC - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpsI PE=3 SV=1 gi\|254825043 - gi\|254825043\|ref\|ZP_05230044.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J1-194] gi\|254854199 - gi\|254854199\|ref\|ZP_05243547.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL R2-503] gi\|254877846 - gi\|254877846\|ref\|ZP_05250556.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J2-071] gi\|254992717 - gi\|254992717\|ref\|ZP_05274907.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J2-064] gi\|255022865 - gi\|255022865\|ref\|ZP_05294851.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J1-208] gi\|255520579 - gi\|255520579\|ref\|ZP_05387816.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL J1-175] RS9_LISIN - 30S ribosomal protein S9 OS=Listeria innocua GN=rpsI PE=3 SV=1 RS9_LISMF - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpsI PE=3 SV=1 RS9_LISIN - 30S ribosomal protein S9 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=rpsI PE=3 SV=1 RS9_LISMC - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=rpsI PE=3 SV=1 gi\|254871298, gi... - gi\|254871298\|ref\|ZP_05244008.1\| 30S ribosomal protein S9 [Listeria monocytogenes FSL N1-017], gi\|153... gi\|254931134, gi... - gi\|254931134\|ref\|ZP_05264493.1\| 30S ribosomal protein S9 [Listeria monocytogenes HPB2262], gi\|153204... gi\|47018096, gi\|... - gi\|47093536\|ref\|ZP_00231297.1\| ribosomal protein S9 [Listeria monocytogenes str. 4b H7858], gi\|47018... RS9_LISMH - 30S ribosomal protein S9 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rpsI PE=3 SV=1	3.0E-47	[151..278]	[3..130]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSRLSLFRR AALAPAPMRM SFRTIYQKTE DELPRRIVPK LATFYSANPN HEDRINRLER  60
   61 LLRKYIKLPS QNNNEAQQTK APWISFDEYA LIGGGTKLKP TQYTQLLYML NKLHNIDPQL 120
  121 TNDEITSELS QYYKKSSMLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [141-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNIKIKTLDE FGRSIAVGKR KSSTAKVFVV RGTGEILVNG RQLNDYFLKM KDRESIMYPL  60
   61 QVIESVGKYN IFATTSGGGP TGQAESIMHA IAKALVVFNP LLKSRLHKAG VLTRDYRHVE 120
  121 RKKPGKKKAR KMPTWVKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	264.70927
Match:	1fjgI_
Description:	Ribosomal protein S9
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	7.32829196949019	bayes_pls_golite062009
structural molecule activity	6.75880680396215	bayes_pls_golite062009
3'-5'-exoribonuclease activity	1.56111033008721	bayes_pls_golite062009
RNA binding	1.40868766468494	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	1.35935222635763	bayes_pls_golite062009
exoribonuclease activity	1.31205157616894	bayes_pls_golite062009
3'-5' exonuclease activity	1.10842504252923	bayes_pls_golite062009
binding	0.923114523007774	bayes_pls_golite062009
catalytic activity	0.878454819018611	bayes_pls_golite062009
nucleic acid binding	0.555181608481691	bayes_pls_golite062009
protein binding	0.398523921130957	bayes_pls_golite062009
transcription regulator activity	0.368412900600617	bayes_pls_golite062009
ribonuclease activity	0.19921800066954	bayes_pls_golite062009
DNA binding	0.0880977286684361	bayes_pls_golite062009
mRNA binding	0.0491645692672305	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	6.9430052008157E-5	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: