Protein: | PEP1 |
Organism: | Saccharomyces cerevisiae |
Length: | 1579 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEP1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..1579] | [1..1549] |
|
0.0 | [7..1441] | [14..1406] |
|
0.0 | [723..1381] | [182..795] |
|
0.0 | [723..1381] | [182..794] |
Region A: Residues: [1-217] |
1 11 21 31 41 51 | | | | | | 1 MILLHFVYSL WALLLIPLTN AEEFTPKVTK TIAQDSFDIL SFDDSNTLIR KQDTSVTISF 60 61 DDGETWEKVE GIEGEITWIY IDPFNRHDRA VATAMNGSYL YITNDQGKSW ERITLPDSGE 120 121 SISPRECYIE THPLNKNYFL AKCNYCEKTE VNNDNEENSG DEEGQFEIFN ITRCTDKVFA 180 181 SNDGGKSFSE IKSSLERNEN SPISISDCGF AKTSKDS |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [218-291] |
1 11 21 31 41 51 | | | | | | 1 DLESSDTSII CLFQNMQLIM DEFSSPYTES KLVLTTDWGK SLKEFDQFKD KVVNGYRILK 60 61 SHMVVLTQGD RYND |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.568 | a.4.1 | Homeodomain-like |
View | Download | 0.501 | d.120.1 | Cytochrome b5 |
View | Download | 0.528 | d.80.1 | Tautomerase/MIF |
View | Download | 0.454 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
View | Download | 0.452 | d.58.12 | eEF-1beta-like |
View | Download | 0.444 | a.64.1 | Saposin |
View | Download | 0.405 | a.21.1 | HMG-box |
View | Download | 0.388 | a.64.1 | Saposin |
View | Download | 0.386 | d.76.1 | GYF domain |
View | Download | 0.372 | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
View | Download | 0.362 | b.34.2 | SH3-domain |
View | Download | 0.314 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
View | Download | 0.300 | a.64.1 | Saposin |
View | Download | 0.275 | f.13.1 | Family A G protein-coupled receptor-like |
View | Download | 0.272 | c.51.1 | Anticodon-binding domain of Class II aaRS |
View | Download | 0.270 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.255 | c.51.1 | Anticodon-binding domain of Class II aaRS |
View | Download | 0.248 | d.37.1 | CBS-domain |
View | Download | 0.246 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.230 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.224 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
Term | Confidence | Notes |
binding | 1.66964148100475 | bayes_pls_golite062009 |
protein binding | 0.931624635835922 | bayes_pls_golite062009 |
transporter activity | 0.711149297585691 | bayes_pls_golite062009 |
transmembrane transporter activity | 0.517650155593165 | bayes_pls_golite062009 |
substrate-specific transporter activity | 0.276105437109391 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 0.113736784801445 | bayes_pls_golite062009 |
Region A: Residues: [292-594] |
1 11 21 31 41 51 | | | | | | 1 MSSMDVWVSN DLSNFKMAYM PTQLRHSMQG EIYEDAMGRI ILPMSRERSD QEEDKGIVSE 60 61 ILISDSQGLK FSPIPWTANE VFGYINFYQP TYLKGTMIAS LYPLSRRRNR KGKAKGVKSK 120 121 GVTKISVDNG LTWTMLKVVD PDNADSFDCD ITDFENCSLQ NMFYTREGST PTAGILMTTG 180 181 IVGDGSVFDW GDQRTFISRD GGLTWKLAFD FPCLYAVGDY GNVIVAIPYN ADEDDDPQSE 240 241 FYYSLDQGKT WTEYQLETTI YPNEVMNTTP DGSGAKFILN GFTLAHMDGT TNFIYAIDFS 300 301 TAF |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [595-685] |
1 11 21 31 41 51 | | | | | | 1 NDKTCEENDF EDWNLAEGKC VNGVKYKIRR RKQDAQCLVK KVFEDLQLFE TACDKCTEAD 60 61 YECAFEFVRD ATGKCVPDYN LIVLSDVCDK T |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.509 | a.39.1 | EF-hand |
View | Download | 0.246 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
View | Download | 0.394 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
Region A: Residues: [686-1421] |
1 11 21 31 41 51 | | | | | | 1 KKKTVPVKPL QLVKGDKCKK PMTVKSVDIS CEGVPKKGTN DKEIVVTENK FDFKIQFYQY 60 61 FDTVTDESLL MINSRGEAYI SHDGGQTIKR FDSNGETIIE VVFNPYYNSS AYLFGSKGSI 120 121 FSTHDRGYSF MTAKLPEARQ LGMPLDFNAK AQDTFIYYGG KNCESILSPE CHAVAYLTND 180 181 GGETFTEMLD NAIHCEFAGS LFKYPSNEDM VMCQVKEKSS QTRSLVSSTD FFQDDKNTVF 240 241 ENIIGYLSTG GYIIVAVPHE NNELRAYVTI DGTEFAEAKF PYDEDVGKQE AFTILESEKG 300 301 SIFLHLATNL VPGRDFGNLL KSNSNGTSFV TLEHAVNRNT FGYVDFEKIQ GLEGIILTNI 360 361 VSNSDKVAEN KEDKQLKTKI TFNEGSDWNF LKPPKRDSEG KKFSCSSKSL DECSLHLHGY 420 421 TERKDIRDTY SSGSALGMMF GVGNVGPNLL PYKECSTFFT TDGGETWAEV KKTPHQWEYG 480 481 DHGGILVLVP ENSETDSISY STDFGKTWKD YKFCADKVLV KDITTVPRDS ALRFLLFGEA 540 541 ADIGGSSFRT YTIDFRNIFE RQCDFDITGK ESADYKYSPL GSKSNCLFGH QTEFLRKTDE 600 601 NCFIGNIPLS EFSRNIKNCS CTRQDFECDY NFYKANDGTC KLVKGLSPAN AADVCKKEPD 660 661 LIEYFESSGY RKIPLSTCEG GLKLDAPSSP HACPGKEKEF KEKYSVSAGP FAFIFISILL 720 721 IIFFAAWFVY DRGIRR |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [1422-1579] |
1 11 21 31 41 51 | | | | | | 1 NGGFARFGEI RLGDDGLIEN NNTDRVVNNI VKSGFYVFSN IGSLLQHTKT NIAHAISKIR 60 61 GRFGNRTGPS YSSLIHDQFL DEADDLLAGH DEDANDLSSF MDQGSNFEIE EDDVPTLEEE 120 121 HTSYTDQPTT TDVPDTLPEG NEENIDRPDS TAPSNENQ |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.