| Protein: | RBG1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 369 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBG1.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-95 | [1..369] | [1..368] |
|
|
6.0E-93 | [4..369] | [3..363] |
|
|
6.0E-93 | [4..369] | [3..364] |
|
|
1.0E-92 | [4..369] | [3..364] |
|
|
2.0E-92 | [1..369] | [1..367] |
|
Region A: Residues: [1-268] |
1 11 21 31 41 51
| | | | | |
1 MSTTVEKIKA IEDEMARTQK NKATSFHLGQ LKAKLAKLRR ELLTSASSGS GGGAGIGFDV 60
61 ARTGVASVGF VGFPSVGKST LLSKLTGTES EAAEYEFTTL VTVPGVIRYK GAKIQMLDLP 120
121 GIIDGAKDGR GRGKQVIAVA RTCNLLFIIL DVNKPLHHKQ IIEKELEGVG IRLNKTPPDI 180
181 LIKKKEKGGI SITNTVPLTH LGNDEIRAVM SEYRINSAEI AFRCDATVDD LIDVLEASSR 240
241 RYMPAIYVLN KIDSLSIEEL ELLYRIPN
|
| Detection Method: |  |
| Confidence: | 33.69897 |
| Match: | 1egaA_ |
| Description: | GTPase Era, N-terminal domain; GTPase Era C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [269-369] |
1 11 21 31 41 51
| | | | | |
1 AVPISSGQDW NLDELLQVMW DRLNLVRIYT KPKGQIPDFT DPVVLRSDRC SVKDFCNQIH 60
61 KSLVDDFRNA LVYGSSVKHQ PQYVGLSHIL EDEDVVTILK K
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| nucleic acid binding | 2.09956015274464 | bayes_pls_golite062009 |
| transcription regulator activity | 2.09345198747025 | bayes_pls_golite062009 |
| guanyl nucleotide binding | 1.89320355239381 | bayes_pls_golite062009 |
| guanyl ribonucleotide binding | 1.88721318481223 | bayes_pls_golite062009 |
| GTP binding | 1.87900088157196 | bayes_pls_golite062009 |
| DNA binding | 1.87765278833074 | bayes_pls_golite062009 |
| GTPase activity | 1.23010905798386 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 1.21658213854831 | bayes_pls_golite062009 |
| ribonucleotide binding | 1.21652144153182 | bayes_pls_golite062009 |
| purine nucleotide binding | 1.21571071905795 | bayes_pls_golite062009 |
| nucleotide binding | 1.20347573865566 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| motor activity | 0.926612891775441 | bayes_pls_golite062009 |
| transcription factor activity | 0.682439846757997 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.498311726132348 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.219555040684154 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.198256709027213 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.197994873032963 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
| helicase activity | 0.0775311459068899 | bayes_pls_golite062009 |
