YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|87202339, gi\|...
Organism:	Staphylococcus aureus subsp. aureus NCTC 8325
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|87202339, gi|....

Description	E-value	Query Range	Subject Range
PTHP_STACA - Phosphocarrier protein HPr OS=Staphylococcus carnosus GN=ptsH PE=1 SV=2 gi\|224476194, gi... - gi\|224476194\|ref\|YP_002633800.1\| phosphocarrier protein HPR [Staphylococcus carnosus subsp. carnosus...	115.0	[0..1]	[88..1]
gi\|68447600, gi\|... - gi\|70726876\|ref\|YP_253790.1\| phosphocarrier protein HPr [Staphylococcus haemolyticus JCSC1435], gi\|6...	115.0	[0..1]	[88..1]
gi\|57637238, gi\|... - gi\|57866580\|ref\|YP_188254.1\| phosphocarrier protein HPr [Staphylococcus epidermidis RP62A], gi\|57637... gi\|27315243, gi\|... - gi\|27467699\|ref\|NP_764336.1\| phosphocarrier protein HPr [Staphylococcus epidermidis ATCC 12228], gi\|... gi\|242242388, gi... - gi\|242242388\|ref\|ZP_04796833.1\| PTS family porter component HPr [Staphylococcus epidermidis W23144],... gi\|251805947, gi... - gi\|251810536\|ref\|ZP_04825009.1\| PTS family porter component HPr [Staphylococcus epidermidis BCM-HMP0...	114.0	[0..1]	[88..1]
gi\|72495532, gi\|... - gi\|73663017\|ref\|YP_301798.1\| phosphocarrier protein HPr [Staphylococcus saprophyticus subsp. saproph...	113.0	[0..1]	[86..1]
PTHP_STAXY - Phosphocarrier protein HPr OS=Staphylococcus xylosus GN=ptsH PE=1 SV=1	113.0	[0..1]	[86..1]
gi\|20808237, gi\|... - gi\|20808237\|ref\|NP_623408.1\| phosphotransferase system, HPr-related proteins [Thermoanaerobacter ten... gi\|20808237 - gi\|20808237\|ref\|NP_623408.1\| Phosphotransferase system, HPr-related proteins [Thermoanaerobacter ten...	112.0	[0..1]	[88..1]
PTHP_BACME - Phosphocarrier protein HPr OS=Bacillus megaterium GN=ptsH PE=1 SV=1	112.0	[0..1]	[88..1]
gi\|74057926, gi\|... - gi\|74318431\|ref\|YP_316171.1\| HPrNtr [Thiobacillus denitrificans ATCC 25259], gi\|74057926\|gb\|AAZ98366...	112.0	[0..1]	[88..1]
PTHP_BACSU - Phosphocarrier protein HPr OS=Bacillus subtilis (strain 168) GN=ptsH PE=1 SV=3 PTHP_BACSU - Phosphocarrier protein HPr OS=Bacillus subtilis GN=ptsH PE=1 SV=3 gi\|221313587 - gi\|221313587\|ref\|ZP_03595392.1\| phosphocarrier protein HPr [Bacillus subtilis subsp. subtilis str. N... gi\|154685800, gi... - gi\|154685800\|ref\|YP_001420961.1\| phosphocarrier protein HPr [Bacillus amyloliquefaciens FZB42], gi\|1... gi\|221322783 - gi\|221322783\|ref\|ZP_03604077.1\| phosphocarrier protein HPr [Bacillus subtilis subsp. subtilis str. S... gi\|221318509 - gi\|221318509\|ref\|ZP_03599803.1\| phosphocarrier protein HPr [Bacillus subtilis subsp. subtilis str. J...	111.0	[0..1]	[88..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQNSYVIID ETGIHARPAT MLVQTASKFD SDIQLEYNGK KVNLKSIMGV MSLGVGKDAE  60
   61 ITIYADGSDE SDAIQAISDV LSKEGLTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1qr5A
Description:	Histidine-containing phosphocarrier protein (HPr)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	5.70778264466435	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	4.7398246519874	bayes_pls_golite062009
transporter activity	1.94557075462337	bayes_pls_golite062009
transmembrane transporter activity	1.8285077384404	bayes_pls_golite062009
active transmembrane transporter activity	1.73790085561506	bayes_pls_golite062009
substrate-specific transporter activity	1.57976971135135	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.4723961195197	bayes_pls_golite062009
catalytic activity	1.16445344378552	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.97685688328333	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.61783246115451	bayes_pls_golite062009
binding	0.569728786489819	bayes_pls_golite062009
transferase activity	0.08533057053308	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: