YRC Public Data Repository - Protein Structure Prediction

Protein:	YJGF_ECOLI
Organism:	Escherichia coli
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJGF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|3257265, gi\|1... - gi\|3257265\|dbj\|BAA29948.1\| 137aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14590714\|... gi\|7444996 - gi\|7444996\|pir\|\|B71136 hypothetical protein PH0854 - Pyrococcus horikoshii	186.0	[0..1]	[127..12]
Y854_PYRHO - UPF0076 protein PH0854 OS=Pyrococcus horikoshii GN=PH0854 PE=1 SV=2 Y854_PYRHO - RutC family protein PH0854 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBR...	186.0	[0..1]	[127..1]
RIDA_PYRFU - 2-iminobutanoate/2-iminopropanoate deaminase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / ...	184.0	[0..1]	[127..1]
Y1251_PYRAB, YC5... - (Q9UZA3) Hypothetical UPF0076 protein PYRAB12510, UPF0076 protein PYRAB12510 OS=Pyrococcus abyssi GN... Y1251_PYRAB - RutC family protein PYRAB12510 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB12510 PE=3 SV=1	176.0	[0..2]	[127..3]
gi\|37197949, gi\|... - gi\|37679206\|ref\|NP_933815.1\| putative translation initiation inhibitor [Vibrio vulnificus YJ016], gi... gi\|27363650, gi\|... - gi\|27363650\|ref\|NP_759178.1\| putative translation initiation inhibitor [Vibrio vulnificus CMCP6], gi...	173.0	[0..1]	[128..1]
gi\|89211378, gi\|... - gi\|89211378\|ref\|ZP_01189746.1\| YjgF-like protein [Halothermothrix orenii H 168], gi\|89159023\|gb\|EAR7...	173.0	[0..2]	[127..3]
gi\|42527572, gi\|... - gi\|42527572\|ref\|NP_972670.1\| endoribonuclease L-PSP, putative [Treponema denticola ATCC 35405], gi\|4...	171.0	[0..1]	[125..1]
gi\|167037280, gi... - gi\|76795304\|ref\|ZP_00777677.1\| YjgF-like protein [Thermoanaerobacter ethanolicus ATCC 33223], gi\|765... gi\|241883716, gi... - gi\|241903918\|ref\|ZP_04788633.1\| endoribonuclease L-PSP [Thermoanaerobacter brockii subsp. finnii Ako...	171.0	[0..1]	[127..1]
gi\|52346407, gi\|... - gi\|52783905\|ref\|YP_089734.1\| YabJ [Bacillus licheniformis ATCC 14580], gi\|52346407\|gb\|AAU39041.1\| Ya...	170.0	[0..1]	[128..1]
gi\|86145067, gi\|... - gi\|86145067\|ref\|ZP_01063399.1\| Putative translation initiation inhibitor [Vibrio sp. MED222], gi\|858...	170.0	[0..1]	[128..1]

Back

Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTIATENA PAAIGPYVQG VDLGNMIITS GQIPVNPKTG EVPADVAAQA RQSLDNVKAI  60
   61 VEAAGLKVGD IVKTTVFVKD LNDFATVNAT YEAFFTEHNA TFPARSCVEV ARLPKDVKIE 120
  121 IEAIAVRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	1qu9A
Description:	Conserved 'hypothetical' protein YjgF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribonuclease activity	5.19435575508494	bayes_pls_golite062009
endoribonuclease activity	3.76425533948565	bayes_pls_golite062009
endonuclease activity	3.57078287701774	bayes_pls_golite062009
nuclease activity	1.95684086528131	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.90373737530073	bayes_pls_golite062009
binding	1.87868720745411	bayes_pls_golite062009
hydrolase activity	1.86428296839828	bayes_pls_golite062009
catalytic activity	1.00848565859536	bayes_pls_golite062009
protein binding	0.378484263251583	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: