YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|75235649, gi\|...
Organism:	Escherichia coli E110019
Length:	302 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75235649, gi|....

Description	E-value	Query Range	Subject Range
CYSD_HAHCH - Sulfate adenylyltransferase subunit 2 OS=Hahella chejuensis (strain KCTC 2396) GN=cysD PE=3 SV=1	339.0	[0..1]	[302..1]
gi\|88778971, gi\|... - gi\|88798195\|ref\|ZP_01113781.1\| sulfate adenylyltransferase subunit 2 [Reinekea sp. MED297], gi\|88778...	339.0	[0..1]	[302..1]
CYSD_SACD2 - Sulfate adenylyltransferase subunit 2 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17...	338.0	[0..1]	[302..2]
gi\|90437436, gi\|... - gi\|90581326\|ref\|ZP_01237122.1\| sulfate adenylyltransferase subunit 2 [Vibrio angustum S14], gi\|90437...	338.0	[0..1]	[302..1]
CYSD_SHEAM - Sulfate adenylyltransferase subunit 2 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=cys...	337.0	[0..1]	[302..1]
gi\|86162580, gi\|... - gi\|87122033\|ref\|ZP_01077917.1\| sulfate adenylyltransferase, subunit 2 [Marinomonas sp. MED121], gi\|8...	337.0	[0..1]	[302..1]
gi\|89047632, gi\|... - gi\|89076712\|ref\|ZP_01162999.1\| sulfate adenylyltransferase subunit 2 [Photobacterium sp. SKA34], gi\|...	337.0	[0..1]	[302..1]
CYSD_VIBFM - Sulfate adenylyltransferase subunit 2 OS=Vibrio fischeri (strain MJ11) GN=cysD PE=3 SV=1 CYSD_VIBF1 - Sulfate adenylyltransferase subunit 2 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=cysD PE=3 S...	337.0	[0..1]	[302..1]
CYSD2_MARHV - Sulfate adenylyltransferase subunit 2 2 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / ...	336.0	[0..1]	[302..3]

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Predicted Domain #1

Region A:
Residues: [1-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQIRLTHLR QLEAESIHII REVAAEFSNP VMLYSIGKDS SVMLHLARKA FYPGTLPFPL  60
   61 LHVDTGWKFR EMYEFRDRTA KAYGCELLVH KNPEGVAMGI NPFVHGSAKH TDIMKTEGLK 120
  121 QALNKYGFDA AFGGARRDEE KSRAKERIYS FRDRFHRWDP KNQRPELWHN YNGQINKGES 180
  181 IRVFPLSNWT EQDIWQYIWL ENIDIVPLYL AAERPVLERD GMLMMIDDNR IDLQPGEVIK 240
  241 KRMVRFRTLG CWPLTGAVES NAQTLPEIIE EMLVSTTSER QGRVIDRDQA GSMELKKRQG 300
  301 YF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.045757
Match:	1zunA
Description:	Crystal Structure of a GTP-Regulated ATP Sulfurylase Heterodimer from Pseudomonas syringae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity	1.34640449962741	bayes_pls_golite062009
catalytic activity	1.19930793139888	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.196167461233561	bayes_pls_golite062009
sulfate adenylyltransferase activity	0.157667990585829	bayes_pls_golite062009
asparagine synthase (glutamine-hydrolyzing) activity	0.0567787332370804	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: