| Protein: | acr-21 |
| Organism: | Caenorhabditis elegans |
| Length: | 469 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acr-21.
| Description | E-value | Query Range |
Subject Range |
|
|
392.0 | [0..2] | [461..107] |
|
Region A: Residues: [1-317] |
1 11 21 31 41 51
| | | | | |
1 MRLYRDLLYD YNNEVRPSVH SKEPINVTFV FSLTQIIDVD ERNQILTTNS WIRLHWVDYK 60
61 LVWDPRLYQN VTRIHIPSDK IWKPDIILYN NADAQYMKSV MSTDVIVDYL GNIHWPLSAI 120
121 FTSSCPLDVK HYPFDRQTCI LKYASWAYDG TKIDLLLKSE QGDLTNYITN TEWSLIGIRA 180
181 EKNQVIYSCC PEPYPFIDVH VTIERRAMFY VFNLILPCVL ISLIALMGFY MPTDSGEKVT 240
241 LGITSLLSTT VFLMMVAEGM PPTAEALPLI GIYFGVTIML VALGTAMTVF TVNIHHTGVH 300
301 GYPVPPFLQI FAFRYLS
|
| Detection Method: |  |
| Confidence: | 76.69897 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [318-469] |
1 11 21 31 41 51
| | | | | |
1 KILFVRIEPY HSIAHHVRYM YQKEHPTECT LSASVHYKRL HDFDANVAKK EEQYGLQRDM 60
61 SNLSVISANV HCNPDDRLLL GSQSSQKNLN KFDSEKNLRS SLSIRSGSPT AKKKVGSIVT 120
121 ITLNYCLYIL TFKITGSRSC IEYCPKYKNN GD
|
| Detection Method: | |
| Confidence: | 41.0 |
| Match: | 1oedC |
| Description: | Acetylcholine receptor protein, delta chain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| acetylcholine binding | 13.9752632471881 | bayes_pls_golite062009 |
| acetylcholine receptor activity | 13.7533645836795 | bayes_pls_golite062009 |
| nicotinic acetylcholine-activated cation-selective channel activity | 13.1511875247796 | bayes_pls_golite062009 |
| extracellular ligand-gated ion channel activity | 11.7813202122163 | bayes_pls_golite062009 |
| excitatory extracellular ligand-gated ion channel activity | 11.7813202122163 | bayes_pls_golite062009 |
| cation channel activity | 11.1823056937132 | bayes_pls_golite062009 |
| ion channel activity | 11.1753684044644 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 11.0903806681397 | bayes_pls_golite062009 |
| channel activity | 11.0903806681397 | bayes_pls_golite062009 |
| gated channel activity | 11.0397691626728 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 10.9870635461822 | bayes_pls_golite062009 |
| substrate-specific channel activity | 10.9375522860542 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 9.34902726749692 | bayes_pls_golite062009 |
| ligand-gated channel activity | 9.34902726749692 | bayes_pls_golite062009 |
| amine binding | 9.11982124959723 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 7.22265353460749 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 6.7875346065164 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 6.75385972663331 | bayes_pls_golite062009 |
| chloride channel regulator activity | 6.26397218402661 | bayes_pls_golite062009 |
| transmembrane receptor activity | 5.4080353535498 | bayes_pls_golite062009 |
| receptor activity | 5.11329651194787 | bayes_pls_golite062009 |
| transporter activity | 5.11262082564788 | bayes_pls_golite062009 |
| transmembrane transporter activity | 5.03439798256257 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 4.91314874981447 | bayes_pls_golite062009 |
| neurotransmitter binding | 4.25797760547212 | bayes_pls_golite062009 |
| neurotransmitter receptor activity | 4.15404686068319 | bayes_pls_golite062009 |
| molecular transducer activity | 4.12549692767753 | bayes_pls_golite062009 |
| signal transducer activity | 4.12549692767753 | bayes_pls_golite062009 |
| binding | 2.4916526322278 | bayes_pls_golite062009 |
| beta-amyloid binding | 1.6057916207188 | bayes_pls_golite062009 |
| G-protein coupled receptor activity | 1.42422063123689 | bayes_pls_golite062009 |
| serotonin binding | 1.33584589886834 | bayes_pls_golite062009 |
| serotonin-activated cation-selective channel activity | 1.31324203158511 | bayes_pls_golite062009 |
| 1.15330735898282 | bayes_pls_golite062009 | |
| channel regulator activity | 1.13923307634251 | bayes_pls_golite062009 |
| toxin binding | 0.79651014283675 | bayes_pls_golite062009 |
| drug binding | 0.64715018605883 | bayes_pls_golite062009 |
| protein binding | 0.406954670483187 | bayes_pls_golite062009 |
| kinase binding | 0.365355763029699 | bayes_pls_golite062009 |
| protein kinase binding | 0.350601457777817 | bayes_pls_golite062009 |
