| Protein: | nhr-35 |
| Organism: | Caenorhabditis elegans |
| Length: | 486 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-35.
| Description | E-value | Query Range |
Subject Range |
|
|
327.0 | [0..1] | [486..2] |
|
Region A: Residues: [1-115] |
1 11 21 31 41 51
| | | | | |
1 MLGTYNGDSK AETDGKDNSI CHICSDVATG RHYGAIACNG CKGFFRRTVR RNYEYHCRFE 60
61 SKCEIDKHNR AVCRYCRFMK CISSGMRDDQ VQSERDVIGK REKKDNMKTY CQDPT
|
| Detection Method: |  |
| Confidence: | 24.30103 |
| Match: | 2hanB |
| Description: | No description for 2hanB was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 4.00967542385368 | bayes_pls_golite062009 |
| DNA binding | 3.60745514727532 | bayes_pls_golite062009 |
| nucleic acid binding | 3.47256374293954 | bayes_pls_golite062009 |
| binding | 2.96409924710655 | bayes_pls_golite062009 |
| transcription activator activity | 2.9532663930699 | bayes_pls_golite062009 |
| transcription factor activity | 2.90769972671972 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.72967350701574 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.55186574506963 | bayes_pls_golite062009 |
| protein binding | 2.44501340584871 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.40923942043513 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.00119042792567 | bayes_pls_golite062009 |
| nuclear hormone receptor binding | 1.91348392022358 | bayes_pls_golite062009 |
| transcription repressor activity | 1.88834375049208 | bayes_pls_golite062009 |
| hormone receptor binding | 1.8288193687002 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.81056798510499 | bayes_pls_golite062009 |
| steroid hormone receptor binding | 1.72196998170947 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.49515149729803 | bayes_pls_golite062009 |
| androgen receptor binding | 1.48596869620742 | bayes_pls_golite062009 |
| transcription factor binding | 1.38523780690867 | bayes_pls_golite062009 |
| steroid hormone receptor activity | 1.28090460550476 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.26452462867497 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.26313925559554 | bayes_pls_golite062009 |
| structural molecule activity | 1.1947100233139 | bayes_pls_golite062009 |
| transporter activity | 0.768214707487563 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.61572149323953 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.58115018700114 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.50876329665586 | bayes_pls_golite062009 |
| receptor activity | 0.230063209127305 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.187612502757984 | bayes_pls_golite062009 |
| catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |
|
Region A: Residues: [116-382] |
1 11 21 31 41 51
| | | | | |
1 PRTSPELTMS PVEDEYDQLL ESLLKSEMTI QSLRDTVITQ TGNVEYTTKS KNRLSHTDRT 60
61 ATLNDVLKSM HSQLLLVIEW AKTLPEFKQL SGADQAVLLK NFAGQHVTLC VAYRSVGAND 120
121 ALKLLNDLYI PRASKTTPHL KEYVDGFYLR DCEKVMDQLV EPMRFLKLDN KEFVALKACV 180
181 LFNPVAPGLS NHAVNLVLNA RRKIFAAFEK YVRVNKPLET TRVGDLTFFI LTPLSVLSKS 240
241 ISEDIMFTKV SGVARIDVLM EELILAE
|
| Detection Method: | |
| Confidence: | 50.09691 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| vitamin D3 receptor activity | 5.5563493713822 | bayes_pls_golite062009 |
| transcription regulator activity | 5.53061626347066 | bayes_pls_golite062009 |
| ecdysteroid hormone receptor activity | 5.24236817167929 | bayes_pls_golite062009 |
| DNA binding | 4.92165988569962 | bayes_pls_golite062009 |
| steroid hormone receptor activity | 4.81441024181511 | bayes_pls_golite062009 |
| nucleic acid binding | 4.78024150262074 | bayes_pls_golite062009 |
| transcription activator activity | 4.53302455129434 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 4.11614358606713 | bayes_pls_golite062009 |
| transcription factor activity | 4.0914094580319 | bayes_pls_golite062009 |
| nuclear hormone receptor binding | 3.91470119037087 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 3.89763470197726 | bayes_pls_golite062009 |
| binding | 3.85318710398432 | bayes_pls_golite062009 |
| transcription repressor activity | 3.83878598697109 | bayes_pls_golite062009 |
| hormone receptor binding | 3.79647267365529 | bayes_pls_golite062009 |
| protein binding | 3.21524787168952 | bayes_pls_golite062009 |
| transcription activator binding | 2.98235973123409 | bayes_pls_golite062009 |
| transcription factor binding | 2.68044489404568 | bayes_pls_golite062009 |
| receptor activity | 2.62895787183554 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.38308182853979 | bayes_pls_golite062009 |
| transcription coactivator activity | 2.27959329058894 | bayes_pls_golite062009 |
| vitamin D binding | 2.05947211013242 | bayes_pls_golite062009 |
| signal transducer activity | 2.04709877069886 | bayes_pls_golite062009 |
| molecular transducer activity | 2.04709877069886 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.73827483890179 | bayes_pls_golite062009 |
| retinoic acid receptor binding | 1.59968001933699 | bayes_pls_golite062009 |
| retinoid binding | 1.57244905045132 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.56146647486761 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.48246587604476 | bayes_pls_golite062009 |
| estrogen receptor activity | 1.47290778095383 | bayes_pls_golite062009 |
| isoprenoid binding | 1.45798199211445 | bayes_pls_golite062009 |
| retinoid X receptor binding | 1.45560845709347 | bayes_pls_golite062009 |
| juvenile hormone binding | 1.35482717568148 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.34794228300778 | bayes_pls_golite062009 |
| promoter binding | 1.28787959668198 | bayes_pls_golite062009 |
| palmitoyl-CoA hydrolase activity | 1.23181585568439 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.995333369475571 | bayes_pls_golite062009 |
| retinoic acid receptor activity | 0.853869057774515 | bayes_pls_golite062009 |
| protein dimerization activity | 0.797229273848179 | bayes_pls_golite062009 |
| steroid hormone receptor binding | 0.754240851368212 | bayes_pls_golite062009 |
| protein N-terminus binding | 0.57701453824007 | bayes_pls_golite062009 |
| thyroid hormone receptor activity | 0.49784404390361 | bayes_pls_golite062009 |
| lipid binding | 0.475303782949439 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.45265806678057 | bayes_pls_golite062009 |
| receptor binding | 0.418843034756825 | bayes_pls_golite062009 |
| estrogen response element binding | 0.26972535024334 | bayes_pls_golite062009 |
| ligand-regulated transcription factor activity | 0.202197503742221 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.15737167800277 | bayes_pls_golite062009 |
| catalytic activity | 0.106902059021677 | bayes_pls_golite062009 |
|
Region A: Residues: [383-486] |
1 11 21 31 41 51
| | | | | |
1 TDYGEDRQDQ TPCSIMNDTP SGSQDMCSPC PEDLLRTSTS SNSPTNSSLT AGLLLKTDDA 60
61 MMSGIGTQYT TPQPHTPQFA DSSHLNLPYA PFTSSYNQYP NTYS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
