YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260236, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260236, gi|....

Description	E-value	Query Range	Subject Range
gi\|228937349, gi... - gi\|228937349\|ref\|ZP_04099996.1\| Pur operon repressor [Bacillus thuringiensis serovar berliner ATCC 1... gi\|228898800, gi... - gi\|228898800\|ref\|ZP_04063083.1\| Pur operon repressor [Bacillus thuringiensis IBL 4222], gi\|228860825... gi\|228976805, gi... - gi\|228976805\|ref\|ZP_04137218.1\| Pur operon repressor [Bacillus thuringiensis Bt407], gi\|228782901\|gb... gi\|74492899, gi\|... - gi\|75759608\|ref\|ZP_00739694.1\| Pur operon repressor [Bacillus thuringiensis serovar israelensis ATCC... gi\|228970235, gi... - gi\|228970235\|ref\|ZP_04130895.1\| Pur operon repressor [Bacillus thuringiensis serovar thuringiensis s... gi\|218544270, gi... - gi\|218895182\|ref\|YP_002443593.1\| pur operon repressor [Bacillus cereus G9842], gi\|218544270\|gb\|ACK96...	4.0E-61	[1..282]	[1..282]
gi\|42735040, gi\|... - gi\|42779125\|ref\|NP_976372.1\| purine operon repressor [Bacillus cereus ATCC 10987], gi\|42735040\|gb\|AA...	8.0E-61	[1..282]	[1..282]
gi\|29893857, gi\|... - gi\|30018317\|ref\|NP_829948.1\| purine operon repressor [Bacillus cereus ATCC 14579], gi\|29893857\|gb\|AA...	9.0E-61	[1..282]	[1..282]
gi\|89154881, gi\|... - gi\|89207201\|ref\|ZP_01185747.1\| Pur operon repressor [Bacillus weihenstephanensis KBAB4], gi\|89154881...	2.0E-60	[1..282]	[1..282]
gi\|218901247, gi... - gi\|218901247\|ref\|YP_002449081.1\| pur operon repressor [Bacillus cereus AH820], gi\|218539021\|gb\|ACK91... gi\|49479993, gi\|... - gi\|49479993\|ref\|YP_034399.1\| purine operon repressor [Bacillus thuringiensis serovar konkukian str. ...	2.0E-60	[1..282]	[1..282]
gi\|229153825, gi... - gi\|229153825\|ref\|ZP_04281956.1\| Pur operon repressor [Bacillus cereus ATCC 4342], gi\|228629629\|gb\|EE... gi\|47553429, gi\|... - gi\|47569895\|ref\|ZP_00240562.1\| pur operon repressor [Bacillus cereus G9241], gi\|47553429\|gb\|EAL11813...	2.0E-60	[1..282]	[1..282]
gi\|34809639, gi\|... - gi\|34809640\|pdb\|1O57\|D Chain D, Crystal Structure Of The Purine Operon Repressor Of Bacillus Subtili...	1.0E-59	[1..280]	[1..279]
PURR_BACSU - Pur operon repressor OS=Bacillus subtilis GN=purR PE=1 SV=1 gi\|221321374 - gi\|221321374\|ref\|ZP_03602668.1\| purine operon repressor [Bacillus subtilis subsp. subtilis str. SMY] gi\|221312178 - gi\|221312178\|ref\|ZP_03593983.1\| purine operon repressor [Bacillus subtilis subsp. subtilis str. NCIB... PURR_BACSU - Pur operon repressor OS=Bacillus subtilis (strain 168) GN=purR PE=1 SV=1 gi\|221317111 - gi\|221317111\|ref\|ZP_03598405.1\| purine operon repressor [Bacillus subtilis subsp. subtilis str. JH64...	1.0E-59	[1..280]	[1..279]
gi\|152022646, gi... - gi\|89202234\|ref\|ZP_01180962.1\| Pur operon repressor [Bacillus cereus subsp. cytotoxis NVH 391-98], g...	9.0E-59	[1..282]	[1..282]
gi\|16799308 - gi\|16799308\|ref\|NP_469576.1\| purine operon repressor [Listeria innocua Clip11262] gi\|16412650, gi\|... - pir\|\|AH1461 PurR, transcription repressor of purine operon of B. subtilis homolog lin0231 [imported]...	6.0E-56	[1..269]	[1..269]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIRRSTRLV DMTYYLLQNP RQLVSLTFFA ERYQSAKSSI SEDLVIIKQT FEQQGVGTLQ  60
   61 TIPGAAGGVK YIPYISEEEA DLIIGELCSL FENPDRILPG GYLYMTDLLS NPRHINGAGR 120
  121 LFASVFARQP IDAVMTVATK GIPLAYAVAN YLDVPVVIAR KDNKVTEGPT VSINYVSGSS 180
  181 KRIQTMTLAK RSLPEGSNVL IIDDFMKAGG TIQGMMSMLE EFKANVVGIG VLVESTDIEE 240
  241 RLINNFVSLI RLSEVDVKEK AIQVEKGNYS LAPFDEGIVE AE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.154902
Match:	1p4aA
Description:	Crystal Structure of the PurR complexed with cPRPP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.98990675336286	bayes_pls_golite062009
DNA binding	3.4273272886116	bayes_pls_golite062009
nucleic acid binding	3.38054693035398	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	3.03016109611914	bayes_pls_golite062009
transcription factor activity	2.80110428028438	bayes_pls_golite062009
uracil phosphoribosyltransferase activity	2.54772263155456	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	2.53464204724265	bayes_pls_golite062009
binding	2.18911933843505	bayes_pls_golite062009
amidophosphoribosyltransferase activity	1.87184614964143	bayes_pls_golite062009
ribose phosphate diphosphokinase activity	1.7212298503296	bayes_pls_golite062009
diphosphotransferase activity	1.16607700772697	bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity	0.824877195846631	bayes_pls_golite062009
transcription activator activity	0.53294679084865	bayes_pls_golite062009
sequence-specific DNA binding	0.53285802828572	bayes_pls_golite062009
transcription repressor activity	0.513853050429619	bayes_pls_golite062009
adenine phosphoribosyltransferase activity	0.46065288387965	bayes_pls_golite062009
protein binding	0.035220363090062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: