YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254906, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254906, gi|....

Description	E-value	Query Range	Subject Range
gi\|163861281, gi... - gi\|89204592\|ref\|ZP_01183169.1\| Binding-protein-dependent transport systems inner membrane component ...	5.0E-71	[1..338]	[1..338]
gi\|218535641, gi... - gi\|218902381\|ref\|YP_002450215.1\| oligopeptide ABC transporter, permease protein [Bacillus cereus AH8... gi\|47554934, gi\|... - gi\|47568386\|ref\|ZP_00239087.1\| OppC [Bacillus cereus G9241], gi\|47554934\|gb\|EAL13284.1\| OppC [Bacill... gi\|49328676, gi\|... - gi\|49477120\|ref\|YP_035422.1\| oligopeptide ABC transporter, permease [Bacillus thuringiensis serovar ...	7.0E-70	[1..338]	[1..338]
gi\|30019335, gi\|... - gi\|30019335\|ref\|NP_830966.1\| oligopeptide transport system permease protein oppC [Bacillus cereus AT... gi\|206968378, gi... - gi\|206968378\|ref\|ZP_03229334.1\| oligopeptide ABC transporter, permease protein [Bacillus cereus AH11... gi\|218236056, gi... - gi\|218236056\|ref\|YP_002365969.1\| oligopeptide ABC transporter, permease protein [Bacillus cereus B42...	8.0E-70	[1..338]	[1..338]
gi\|42736295, gi\|... - gi\|42780376\|ref\|NP_977623.1\| oligopeptide ABC transporter, permease protein [Bacillus cereus ATCC 10...	1.0E-69	[1..338]	[1..338]
gi\|228821264, gi... - gi\|228938402\|ref\|ZP_04101012.1\| hypothetical protein bthur0008_10680 [Bacillus thuringiensis serovar... gi\|228977892, gi... - gi\|228977892\|ref\|ZP_04138273.1\| hypothetical protein bthur0002_10980 [Bacillus thuringiensis Bt407],... gi\|10717145 - gi\|10717145\|gb\|AAG22036.1\|AF305387_3 OppC [Bacillus thuringiensis] gi\|228788431, gi... - gi\|228971281\|ref\|ZP_04131909.1\| hypothetical protein bthur0003_10610 [Bacillus thuringiensis serovar...	2.0E-69	[2..338]	[1..337]
gi\|89151430, gi\|... - gi\|89200604\|ref\|ZP_01179356.1\| Binding-protein-dependent transport systems inner membrane component ...	5.0E-69	[1..338]	[1..338]
gi\|150390667, gi... - gi\|77683645\|ref\|ZP_00799091.1\| Binding-protein-dependent transport systems inner membrane component ...	6.0E-66	[7..337]	[2..303]
gi\|10172642, gi\|... - gi\|15612593\|ref\|NP_240896.1\| oligopeptide ABC transporter (permease) [Bacillus halodurans C-125], gi... gi\|25296705 - pir\|\|F83653 oligopeptide ABC transporter (permease) BH0030 [imported] - Bacillus halodurans (strain ...	2.0E-65	[13..337]	[5..300]
gi\|56378846, gi\|... - gi\|56419004\|ref\|YP_146322.1\| dipeptide ABC transporter (permease) [Geobacillus kaustophilus HTA426],...	4.0E-65	[17..337]	[7..298]
gi\|89087265, gi\|... - gi\|89098102\|ref\|ZP_01170988.1\| oligopeptide ABC transporter (permease) [Bacillus sp. NRRL B-14911], ...	1.0E-64	[5..338]	[1..305]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKDVQKLSP DLFQQANQNN VDNEVIARPS LTFWQDVRRR LFQHKGAMFG LVLLTLIILL  60
   61 AILGPMVSKH SYKEQDLGRA KLPPKIPVIE NVHWLPFDGT DQYGVDQYEK RDIKEYFWFG 120
  121 TDDLG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [126-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDLWTRTWEG TRVSLYIALL AAAIDLVIGV AYGGISAFYG GRVDNIMQRI MEIINGIPYL  60
   61 IIVILMVIIM GSGIWSITLA MAITGWIGMS RIVRGQILKL KNQEYVLASR TLGATNTQLI 120
  121 VKHLIPNVMG PIIVMTMFTI PTAVFGEAFL SFIGLGIQPP FASLGSLVND GYKSIQTYPH 180
  181 MMFIPAVVIS ILILAFNLMA DGLRDALDPK MRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.69897
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
ATPase activity, coupled to transmembrane movement of substances	7.98776119907207	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	7.98726234902655	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	7.98726234902655	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	7.97287417765536	bayes_pls_golite062009
primary active transmembrane transporter activity	7.96249144456164	bayes_pls_golite062009
active transmembrane transporter activity	7.8678894318504	bayes_pls_golite062009
ATPase activity, coupled	7.29227234008448	bayes_pls_golite062009
ATPase activity	6.94069583578738	bayes_pls_golite062009
nucleoside-triphosphatase activity	6.59903874016214	bayes_pls_golite062009
pyrophosphatase activity	6.52169210550643	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	6.50067149801529	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	6.5003333073452	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.78398318541319	bayes_pls_golite062009
ion transmembrane transporter activity	5.07829337366931	bayes_pls_golite062009
hydrolase activity	4.78607811092587	bayes_pls_golite062009
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
cation transmembrane transporter activity	4.35124450289762	bayes_pls_golite062009
substrate-specific transporter activity	3.91409799494188	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	3.2006428628965	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.95360205425391	bayes_pls_golite062009
sugar transmembrane transporter activity	2.67115360425434	bayes_pls_golite062009
iron ion transmembrane transporter activity	2.58662753282402	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	2.56867883684303	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.42763030383098	bayes_pls_golite062009
maltose-transporting ATPase activity	2.14010989459818	bayes_pls_golite062009
oligosaccharide-transporting ATPase activity	2.14010989459818	bayes_pls_golite062009
oligosaccharide transmembrane transporter activity	2.14010989459818	bayes_pls_golite062009
maltose transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
disaccharide transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
glucoside transmembrane transporter activity	2.04706530621258	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.92041789093512	bayes_pls_golite062009
anion transmembrane transporter activity	1.81715503217512	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.79613658743425	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.74937989644368	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.798639167073698	bayes_pls_golite062009
sulfate transmembrane transporter activity	0.72950761930647	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
catalytic activity	0.427775057748038	bayes_pls_golite062009
maltooligosaccharide-importing ATPase activity	0.16532450344344	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: