YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255869, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	395 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255869, gi|....

Description	E-value	Query Range	Subject Range
gi\|228656558, gi... - gi\|229126958\|ref\|ZP_04255969.1\| Aspartate aminotransferase [Bacillus cereus BDRD-Cer4], gi\|228656558... gi\|29895237, gi\|... - gi\|30019693\|ref\|NP_831324.1\| aspartate aminotransferase [Bacillus cereus ATCC 14579], gi\|29895237\|gb...	0.0	[1..395]	[1..395]
gi\|228984724, gi... - gi\|228984724\|ref\|ZP_04144896.1\| Aspartate aminotransferase [Bacillus thuringiensis serovar tochigien... gi\|228628337, gi... - gi\|229155210\|ref\|ZP_04283322.1\| Aspartate aminotransferase [Bacillus cereus ATCC 4342], gi\|228628337... gi\|47566009, gi\|... - gi\|47566009\|ref\|ZP_00237047.1\| aspartate aminotransferase [Bacillus cereus G9241], gi\|47556926\|gb\|EA...	0.0	[1..395]	[1..395]
AAT1_BACSU - Aspartate aminotransferase OS=Bacillus subtilis GN=aspB PE=3 SV=1 AAT1_BACSU - Aspartate aminotransferase OS=Bacillus subtilis (strain 168) GN=aspB PE=3 SV=1 gi\|221314475 - gi\|221314475\|ref\|ZP_03596280.1\| aspartate aminotransferase [Bacillus subtilis subsp. subtilis str. N... gi\|221319397 - gi\|221319397\|ref\|ZP_03600691.1\| aspartate aminotransferase [Bacillus subtilis subsp. subtilis str. J... gi\|221323673 - gi\|221323673\|ref\|ZP_03604967.1\| aspartate aminotransferase [Bacillus subtilis subsp. subtilis str. S...	0.0	[1..392]	[1..392]
gi\|42780748, gi\|... - gi\|42780748\|ref\|NP_977995.1\| aspartate aminotransferase [Bacillus cereus ATCC 10987], gi\|42736668\|gb...	0.0	[1..395]	[1..395]
gi\|228859394, gi... - gi\|228900225\|ref\|ZP_04064456.1\| Aspartate aminotransferase [Bacillus thuringiensis IBL 4222], gi\|228... gi\|75760397, gi\|... - gi\|75760397\|ref\|ZP_00740441.1\| Aspartate aminotransferase [Bacillus thuringiensis serovar israelensi...	0.0	[1..395]	[1..395]
gi\|163861658, gi... - gi\|89204918\|ref\|ZP_01183493.1\| Aminotransferase, class I and II [Bacillus weihenstephanensis KBAB4],... gi\|228617065, gi... - gi\|229166491\|ref\|ZP_04294247.1\| Aspartate aminotransferase [Bacillus cereus AH621], gi\|228617065\|gb\|... gi\|228651159, gi... - gi\|229132453\|ref\|ZP_04261307.1\| Aspartate aminotransferase [Bacillus cereus BDRD-ST196], gi\|22865115...	0.0	[1..395]	[1..395]
gi\|48895332, gi\|... - gi\|71675283\|ref\|ZP_00673028.1\| Aminotransferase, class I and II [Trichodesmium erythraeum IMS101], g...	0.0	[1..390]	[1..385]
gi\|25315638 - pir\|\|G83861 aspartate aminotransferase aspB [imported] - Bacillus halodurans (strain C-125) gi\|10174312, gi\|... - gi\|15614258\|ref\|NP_242561.1\| aspartate aminotransferase [Bacillus halodurans C-125], gi\|10174312\|dbj...	1.0E-99	[1..393]	[1..393]
AAT_AQUAE - Aspartate aminotransferase OS=Aquifex aeolicus (strain VF5) GN=aspC PE=3 SV=1 AAT_AQUAE - Aspartate aminotransferase OS=Aquifex aeolicus GN=aspC PE=3 SV=1	2.0E-99	[1..391]	[1..393]
gi\|82401615, gi\|... - gi\|82500405\|ref\|ZP_00885821.1\| PLP-dependent aminotransferases [Caldicellulosiruptor saccharolyticus...	1.0E-98	[1..393]	[1..397]

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Predicted Domain #1

Region A:
Residues: [1-395]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLAKRVAAL TPSATLEITA KAQALKAEGH DVIGLGAGEP DFNTPEHIMD AAHKAMLEGH  60
   61 TKYTPTGGLQ ALKQEIVKKF TRDQGIAYDP SEIIVCNGAK HALYTLFQVL LDEGDEVIIP 120
  121 TPYWVSYPEQ VKLAGGKPVY VEGLEGNEYK ITAEQLREAI TEKTKAVIIN SPSNPTGMIY 180
  181 SKEELQQLGE VCLEHDILIV SDEIYEKLIY GGAEYTSIAQ LSNALKEQTL IINGVSKSHS 240
  241 MTGWRIGYAA GNKQLIKAMT NLASHSTSNP TSIAQYGAIA AYAGSQEPVE TMRQAFEERL 300
  301 NIIYDKLIQI PGFTCIKPQG AFYLFPNVKE AVALSGYETV DEWAKALLEE EKVALVPGTG 360
  361 FGAPNNVRLS YATSLEQVEK ALERIHTFMK SKVQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	95.69897
Match:	1j32A
Description:	Aspartate aminotransferase, AAT
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
L-aspartate:2-oxoglutarate aminotransferase activity	5.51961002550688	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
4-aminobutyrate transaminase activity	1.82501790383768	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	1.63055151623667	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	1.63055151623667	bayes_pls_golite062009
transferase activity	1.44093490824786	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
histidinol-phosphate transaminase activity	1.26617748508821	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances	0.942545094747784	bayes_pls_golite062009
hydrolase activity, acting on acid carbon-carbon bonds	0.845816961387768	bayes_pls_golite062009
5-aminolevulinate synthase activity	0.54326874956263	bayes_pls_golite062009
binding	0.536634592992536	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.319452731970428	bayes_pls_golite062009
vitamin B6 binding	0.16957228630576	bayes_pls_golite062009
pyridoxal phosphate binding	0.16957228630576	bayes_pls_golite062009
aromatic-amino-acid:2-oxoglutarate aminotransferase activity	0.0916183433120769	bayes_pls_golite062009
kynureninase activity	0.0900983660305177	bayes_pls_golite062009
cystathionine beta-lyase activity	0.0833010353195099	bayes_pls_golite062009
nucleic acid binding	0.013097682076602	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: