YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259854, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259854, gi|....

Description	E-value	Query Range	Subject Range
gi\|20808237, gi\|... - gi\|20808237\|ref\|NP_623408.1\| phosphotransferase system, HPr-related proteins [Thermoanaerobacter ten... gi\|20808237 - gi\|20808237\|ref\|NP_623408.1\| Phosphotransferase system, HPr-related proteins [Thermoanaerobacter ten...	1.0E-24	[1..82]	[1..82]
gi\|241885227, gi... - gi\|241902512\|ref\|ZP_04787246.1\| phosphocarrier, HPr family [Thermoanaerobacter brockii subsp. finni... gi\|76796564, gi\|... - gi\|76796564\|ref\|ZP_00778923.1\| Phosphoryl transfer system, HPr [Thermoanaerobacter ethanolicus ATCC ...	4.0E-24	[1..82]	[1..82]
gi\|72495532, gi\|... - gi\|73663017\|ref\|YP_301798.1\| phosphocarrier protein HPr [Staphylococcus saprophyticus subsp. saproph...	6.0E-24	[1..81]	[1..81]
gi\|114804824, gi... - gi\|167039835\|ref\|YP_001662820.1\| phosphotransferase system, phosphocarrier protein HPr [Thermoanaero... gi\|242256248, gi... - gi\|242256248\|ref\|ZP_04801142.1\| phosphocarrier, HPr family [Thermoanaerobacter sp. X513], gi\|2422322...	8.0E-24	[1..82]	[1..82]
PTHP_STACA - Phosphocarrier protein HPr OS=Staphylococcus carnosus GN=ptsH PE=1 SV=2 gi\|224476194, gi... - gi\|224476194\|ref\|YP_002633800.1\| phosphocarrier protein HPR [Staphylococcus carnosus subsp. carnosus...	9.0E-24	[1..81]	[1..81]
gi\|68447600, gi\|... - gi\|70726876\|ref\|YP_253790.1\| phosphocarrier protein HPr [Staphylococcus haemolyticus JCSC1435], gi\|6...	1.0E-23	[1..81]	[1..81]
gi\|87160965\|ref\|... - phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus USA300], phosphocarrier protein HPr ... gi\|255005870 - gi\|255005870\|ref\|ZP_05144471.2\| phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus Mu50... PTHP_STAAM - Phosphocarrier protein HPr OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ptsH PE=3 SV=1 gi\|253733683, gi... - gi\|253733683\|ref\|ZP_04867848.1\| phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus TCH1... gi\|253731693, gi... - gi\|253731693\|ref\|ZP_04865858.1\| phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus USA3... gi\|253315147 - gi\|253315147\|ref\|ZP_04838360.1\| phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus str.... gi\|251813984, gi... - gi\|251813984\|ref\|ZP_04828457.1\| phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus TCH7... gi\|269202694\|ref... - phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus ED98] gi\|227851146, gi... - gi\|227900496\|ref\|ZP_04018301.1\| phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus TCH6... gi\|227558708, gi... - gi\|227558708\|ref\|ZP_03988755.1\| phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus MN8]... PTHP_STAAS - Phosphocarrier protein HPr OS=Staphylococcus aureus (strain MSSA476) GN=ptsH PE=3 SV=1 PTHP_STAAN - Phosphocarrier protein HPr OS=Staphylococcus aureus (strain N315) GN=ptsH PE=1 SV=1 gi\|161509265, gi... - gi\|161509265\|ref\|YP_001574924.1\| phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus USA... PTHP_STAAW - Phosphocarrier protein HPr OS=Staphylococcus aureus (strain MW2) GN=ptsH PE=3 SV=1 gi\|156979406, gi... - gi\|156979406\|ref\|YP_001441665.1\| phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus Mu3... gi\|221138099 - gi\|221138099\|ref\|ZP_03562901.1\| phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus str.... PTHP_STAAR - Phosphocarrier protein HPr OS=Staphylococcus aureus (strain MRSA252) GN=ptsH PE=3 SV=1 gi\|221142444 - gi\|221142444\|ref\|ZP_03566937.1\| phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus str.... PTHP_STAAU - Phosphocarrier protein HPr OS=Staphylococcus aureus GN=ptsH PE=1 SV=1 gi\|151221161, gi... - gi\|151221161\|ref\|YP_001331983.1\| phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus str... PTHP_STAAC - Phosphocarrier protein HPr OS=Staphylococcus aureus (strain COL) GN=ptsH PE=3 SV=1 gi\|149946083, gi... - gi\|90583649\|ref\|ZP_01239402.1\| Phosphoryl transfer system, HPr [Staphylococcus aureus subsp. aureus ... gi\|90586078, gi\|... - gi\|90586078\|ref\|ZP_01241781.1\| Phosphoryl transfer system, HPr [Staphylococcus aureus subsp. aureus ... gi\|87202339, gi\|... - gi\|88194781\|ref\|YP_499577.1\| phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus NCTC 83... gi\|87160965, gi\|... - gi\|87160965\|ref\|YP_493681.1\| phosphocarrier protein HPr [Staphylococcus aureus subsp. aureus USA300_... gi\|82750693, gi\|... - gi\|82750693\|ref\|YP_416434.1\| phosphocarrier protein HPr [Staphylococcus aureus RF122], gi\|82656224\|e...	1.0E-23	[1..81]	[1..81]
PTHP_STAXY - Phosphocarrier protein HPr OS=Staphylococcus xylosus GN=ptsH PE=1 SV=1	1.0E-23	[1..81]	[1..81]
gi\|57637238, gi\|... - gi\|57866580\|ref\|YP_188254.1\| phosphocarrier protein HPr [Staphylococcus epidermidis RP62A], gi\|57637... gi\|27315243, gi\|... - gi\|27467699\|ref\|NP_764336.1\| phosphocarrier protein HPr [Staphylococcus epidermidis ATCC 12228], gi\|... gi\|242242388, gi... - gi\|242242388\|ref\|ZP_04796833.1\| PTS family porter component HPr [Staphylococcus epidermidis W23144],... gi\|251805947, gi... - gi\|251810536\|ref\|ZP_04825009.1\| PTS family porter component HPr [Staphylococcus epidermidis BCM-HMP0...	3.0E-23	[1..81]	[1..81]
gi\|74057926, gi\|... - gi\|74318431\|ref\|YP_316171.1\| HPrNtr [Thiobacillus denitrificans ATCC 25259], gi\|74057926\|gb\|AAZ98366...	3.0E-23	[1..81]	[1..81]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQKRVQVSL KNGLQARPAA LFVQEANRFH ADIFIEKDGK TVNAKSIMGI MSLAIGTGSM  60
   61 ITITTEGSDA EEALEALAAY VQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.30103
Match:	1mo1A
Description:	CRYSTAL STRUCTURE AT 1.8 ANGSTROMS OF SELENO METHIONYLED CRH, THE BACILLUS SUBTILIS CATABOLITE REPRESSION CONTAINING PROTEIN CRH REVEALS AN UNEXPECTED SWAPPING DOMAIN AS AN UNTERTWINNED DIMER
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	5.70778264466435	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	4.7398246519874	bayes_pls_golite062009
transporter activity	1.94557075462337	bayes_pls_golite062009
transmembrane transporter activity	1.8285077384404	bayes_pls_golite062009
active transmembrane transporter activity	1.73790085561506	bayes_pls_golite062009
substrate-specific transporter activity	1.57976971135135	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.4723961195197	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.97685688328333	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.61783246115451	bayes_pls_golite062009
binding	0.569728786489819	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: