YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15601943, gi\|...
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15601943, gi|....

Description	E-value	Query Range	Subject Range
TADA_HAEIN, YFHC... - (P44931) Hypothetical protein HI0906, tRNA-specific adenosine deaminase OS=Haemophilus influenzae GN... TADA_HAEIN - tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / ...	187.0	[0..1]	[159..6]
gi\|116184449 - gi\|116184449\|ref\|ZP_01474386.1\| hypothetical protein VEx2w_02003038 [Vibrio sp. Ex25]	186.0	[0..2]	[164..27]
gi\|42631229 - gi\|42631229\|ref\|ZP_00156767.1\| COG0590: Cytosine/adenosine deaminases [Haemophilus influenzae R2866] gi\|46129130 - gi\|46129130\|ref\|ZP_00202007.1\| COG0590: Cytosine/adenosine deaminases [Haemophilus influenzae R2846] gi\|145638273, gi... - gi\|145638273\|ref\|ZP_01793883.1\| preprotein translocase subunit SecA [Haemophilus influenzae PittII],... gi\|145269821, gi... - gi\|145636963\|ref\|ZP_01792627.1\| preprotein translocase subunit SecA [Haemophilus influenzae PittHH],... gi\|68057691, gi\|... - gi\|68249492\|ref\|YP_248604.1\| hypothetical protein NTHI1073 [Haemophilus influenzae 86-028NP], gi\|680...	186.0	[0..1]	[159..6]
gi\|53728716 - gi\|53728716\|ref\|ZP_00348220.1\| COG0590: Cytosine/adenosine deaminases [Haemophilus somnus 2336]	185.0	[0..9]	[159..1]
gi\|116094620, gi... - gi\|23003746\|ref\|ZP_00047397.1\| hypothetical protein Lgas_03001770 [Lactobacillus gasseri ATCC 33323]... gi\|226820266 - gi\|226820266\|ref\|ZP_03809385.1\| cytosine/adenosine deaminase [Lactobacillus gasseri MV-22] gi\|238853616, gi... - gi\|238853616\|ref\|ZP_04643985.1\| tRNA-specific adenosine deaminase [Lactobacillus gasseri 202-4], gi\|... gi\|23003746 - gi\|23003746\|ref\|ZP_00047397.1\| COG0590: Cytosine/adenosine deaminases [Lactobacillus gasseri]	185.0	[0..1]	[156..1]
gi\|52306511, gi\|... - gi\|52424459\|ref\|YP_087596.1\| hypothetical protein MS0404 [Mannheimia succiniciproducens MBEL55E], gi...	185.0	[0..4]	[159..6]
gi\|113461754, gi... - gi\|113461754\|ref\|YP_719823.1\| tRNA-adenosine deaminase [Haemophilus somnus 129PT], gi\|112823797\|gb\|A...	184.0	[0..9]	[159..1]
gi\|228657922, gi... - gi\|229125538\|ref\|ZP_04254572.1\| hypothetical protein bcere0015_100 [Bacillus cereus BDRD-Cer4], gi\|2... gi\|30018294, gi\|... - gi\|30018294\|ref\|NP_829925.1\| cytosine deaminase [Bacillus cereus ATCC 14579], gi\|29893834\|gb\|AAP0712...	184.0	[0..1]	[159..1]
gi\|126096848, gi... - gi\|126208056\|ref\|YP_001053281.1\| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae ... gi\|46143725 - gi\|46143725\|ref\|ZP_00134574.2\| COG0590: Cytosine/adenosine deaminases [Actinobacillus pleuropneumoni...	183.0	[0..2]	[148..29]
gi\|37679027, gi\|... - gi\|37679027\|ref\|NP_933636.1\| cytosine/adenosine deaminase [Vibrio vulnificus YJ016], gi\|37197769\|dbj...	183.0	[0..2]	[166..8]

Back

Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSDMDEKWM RHALRLADKA EQLGEIPVGA VLVDEQGNLL GEGWNLSISE SDPTAHAEIV  60
   61 ALRQGGQRLQ NYRLLNTTLY VTLEPCTMCA GAILHSRIKR LVFGASDYKT GAVGSRFHFF 120
  121 DDYKMNHAIE ITAGVLQEEC SQKISAFFQK RREQQKIAKQ KSHLET

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.154902
Match:	1z3aA
Description:	Crystal structure of tRNA adenosine deaminase TadA from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytidine deaminase activity	4.42667374679603	bayes_pls_golite062009
deaminase activity	2.76997916054448	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	2.27736397496642	bayes_pls_golite062009
catalytic activity	1.70756445127105	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.51294035758003	bayes_pls_golite062009
methyltransferase activity	1.24697538679504	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.16679252289538	bayes_pls_golite062009
IMP cyclohydrolase activity	1.11605611485835	bayes_pls_golite062009
binding	1.05190374148481	bayes_pls_golite062009
phosphoribosylaminoimidazolecarboxamide formyltransferase activity	0.827438033765078	bayes_pls_golite062009
transferase activity	0.771056210634777	bayes_pls_golite062009
hydrolase activity	0.452099352697972	bayes_pls_golite062009
cyclohydrolase activity	0.308525511259279	bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity	0.1546696349714	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: