YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262903, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262903, gi|....

Description	E-value	Query Range	Subject Range
gi\|51976050, gi\|... - gi\|52142581\|ref\|YP_084248.1\| peptidoglycan N-acetylglucosamine deacetylase [Bacillus cereus E33L], g...	2.0E-64	[1..275]	[1..275]
gi\|42737959, gi\|... - gi\|42782035\|ref\|NP_979282.1\| hypothetical protein BCE_2979 [Bacillus cereus ATCC 10987], gi\|42737959...	7.0E-64	[1..275]	[1..275]
gi\|65320217, gi\|... - gi\|65320217\|ref\|ZP_00393176.1\| COG0726: Predicted xylanase/chitin deacetylase [Bacillus anthracis st...	1.0E-63	[1..275]	[1..275]
gi\|206971805, gi... - gi\|206971805\|ref\|ZP_03232754.1\| polysaccharide deacetylase [Bacillus cereus AH1134], gi\|206733190\|gb... gi\|29896599, gi\|... - gi\|30021046\|ref\|NP_832677.1\| peptidoglycan N-acetylglucosamine deacetylase [Bacillus cereus ATCC 145... gi\|228604120, gi... - gi\|229179222\|ref\|ZP_04306576.1\| Polysaccharide deacetylase [Bacillus cereus 172560W], gi\|228604120\|g... gi\|228673127, gi... - gi\|229110387\|ref\|ZP_04239959.1\| Polysaccharide deacetylase [Bacillus cereus Rock1-15], gi\|228673127\|...	4.0E-62	[1..275]	[1..275]
gi\|217064653, gi... - gi\|217959481\|ref\|YP_002338033.1\| putative polysaccharide deacetylase [Bacillus cereus AH187], gi\|217... gi\|221239682, gi... - gi\|222095624\|ref\|YP_002529681.1\| polysaccharide deacetylase, putative [Bacillus cereus Q1], gi\|22123... gi\|228644623, gi... - gi\|229138707\|ref\|ZP_04267288.1\| Polysaccharide deacetylase [Bacillus cereus BDRD-ST26], gi\|228644623... gi\|47553481, gi\|... - gi\|47569835\|ref\|ZP_00240504.1\| peptidoglycan N-acetylglucosamine deacetylase [Bacillus cereus G9241]... gi\|228774592, gi... - gi\|228985105\|ref\|ZP_04145272.1\| Polysaccharide deacetylase [Bacillus thuringiensis serovar tochigien... gi\|229199619, gi... - gi\|229199619\|ref\|ZP_04326275.1\| Polysaccharide deacetylase [Bacillus cereus m1293], gi\|228583862\|gb\|... gi\|228627909, gi... - gi\|229155591\|ref\|ZP_04283699.1\| Polysaccharide deacetylase [Bacillus cereus ATCC 4342], gi\|228627909...	8.0E-55	[1..275]	[1..273]
gi\|167513773, gi... - gi\|167638472\|ref\|ZP_02396749.1\| putative polysaccharide deacetylase [Bacillus anthracis str. A0193],... gi\|254750826 - gi\|254750826\|ref\|ZP_05202865.1\| putative polysaccharide deacetylase [Bacillus anthracis str. Vollum] gi\|167632971, gi... - gi\|167632971\|ref\|ZP_02391297.1\| putative polysaccharide deacetylase [Bacillus anthracis str. A0442],... gi\|254741275 - gi\|254741275\|ref\|ZP_05198963.1\| putative polysaccharide deacetylase [Bacillus anthracis str. Kruger ... gi\|165870126, gi... - gi\|165870126\|ref\|ZP_02214782.1\| putative polysaccharide deacetylase [Bacillus anthracis str. A0488],... gi\|254734875 - gi\|254734875\|ref\|ZP_05192587.1\| putative polysaccharide deacetylase [Bacillus anthracis str. Western... gi\|254721329 - gi\|254721329\|ref\|ZP_05183119.1\| putative polysaccharide deacetylase [Bacillus anthracis str. A1055] gi\|254760066 - gi\|254760066\|ref\|ZP_05212090.1\| putative polysaccharide deacetylase [Bacillus anthracis str. Austral... gi\|218903128, gi... - gi\|218903128\|ref\|YP_002450962.1\| putative polysaccharide deacetylase [Bacillus cereus AH820], gi\|218... gi\|196047262, gi... - gi\|196047262\|ref\|ZP_03114477.1\| putative polysaccharide deacetylase [Bacillus cereus 03BB108], gi\|19... gi\|196039629, gi... - gi\|196039629\|ref\|ZP_03106933.1\| putative polysaccharide deacetylase [Bacillus cereus NVH0597-99], gi... gi\|196036952, gi... - gi\|196036952\|ref\|ZP_03104331.1\| putative polysaccharide deacetylase [Bacillus cereus W], gi\|19599044... gi\|190562477, gi... - gi\|190566342\|ref\|ZP_03019260.1\| putative polysaccharide deacetylase [Bacillus anthracis Tsiankovskii... gi\|177650764, gi... - gi\|177650764\|ref\|ZP_02933661.1\| putative polysaccharide deacetylase [Bacillus anthracis str. A0174],... gi\|170129074, gi... - gi\|170706072\|ref\|ZP_02896534.1\| putative polysaccharide deacetylase [Bacillus anthracis str. A0389],... gi\|170686456, gi... - gi\|170686456\|ref\|ZP_02877677.1\| putative polysaccharide deacetylase [Bacillus anthracis str. A0465],... gi\|118477429, gi... - gi\|118477429\|ref\|YP_894580.1\| polysaccharide deacetylase [Bacillus thuringiensis str. Al Hakam], gi\|... gi\|52143442, gi\|... - gi\|52143442\|ref\|YP_083386.1\| polysaccharide deacetylase [Bacillus cereus E33L], gi\|51976911\|gb\|AAU18... gi\|49184846, gi\|... - gi\|49184846\|ref\|YP_028098.1\| polysaccharide deacetylase, putative [Bacillus anthracis str. Sterne], ... gi\|49481196, gi\|... - gi\|49481196\|ref\|YP_036140.1\| polysaccharide deacetylase [Bacillus thuringiensis serovar konkukian st... gi\|30262006, gi\|... - gi\|30262006\|ref\|NP_844383.1\| polysaccharide deacetylase, putative [Bacillus anthracis str. Ames], gi... gi\|47502420, gi\|... - gi\|47527272\|ref\|YP_018621.1\| polysaccharide deacetylase, putative [Bacillus anthracis str. 'Ames Anc... gi\|228844916, gi... - gi\|228914597\|ref\|ZP_04078206.1\| Polysaccharide deacetylase [Bacillus thuringiensis serovar pulsiensi... gi\|227815203, gi... - gi\|227815203\|ref\|YP_002815212.1\| putative polysaccharide deacetylase [Bacillus anthracis str. CDC 68... gi\|225788635, gi... - gi\|225863935\|ref\|YP_002749313.1\| putative polysaccharide deacetylase [Bacillus cereus 03BB102], gi\|2... gi\|229090989, gi... - gi\|229090989\|ref\|ZP_04222213.1\| Polysaccharide deacetylase [Bacillus cereus Rock3-42], gi\|228692390\|... gi\|228945618, gi... - gi\|228945618\|ref\|ZP_04107968.1\| Polysaccharide deacetylase [Bacillus thuringiensis serovar monterrey... gi\|228933305, gi... - gi\|228933305\|ref\|ZP_04096161.1\| Polysaccharide deacetylase [Bacillus thuringiensis serovar andalousi... gi\|228927069, gi... - gi\|228927069\|ref\|ZP_04090134.1\| Polysaccharide deacetylase [Bacillus thuringiensis serovar pondicher... gi\|254684571 - gi\|254684571\|ref\|ZP_05148431.1\| putative polysaccharide deacetylase [Bacillus anthracis str. CNEVA-9... gi\|229600568, gi... - gi\|229600568\|ref\|YP_002866375.1\| putative polysaccharide deacetylase [Bacillus anthracis str. A0248]... gi\|229184211, gi... - gi\|229184211\|ref\|ZP_04311420.1\| Polysaccharide deacetylase [Bacillus cereus BGSC 6E1], gi\|228599326\|... gi\|228662018, gi... - gi\|229121554\|ref\|ZP_04250781.1\| Polysaccharide deacetylase [Bacillus cereus 95/8201], gi\|228662018\|g...	1.0E-54	[1..275]	[1..273]
gi\|75763735, gi\|... - gi\|75763735\|ref\|ZP_00743406.1\| Peptidoglycan N-acetylglucosamine deacetylase [Bacillus thuringiensis... gi\|228855120, gi... - gi\|228904515\|ref\|ZP_04068601.1\| Polysaccharide deacetylase [Bacillus thuringiensis IBL 4222], gi\|228...	5.0E-50	[14..275]	[14..273]

Back

Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNGIRMTTL MKRAMLICAG VLFTYEAALG SAHTALASTE DEAKSVQLVS EIQSSLAPKE  60
   61 APKQYNGQVR KVAYLTFDDG PGKYTAELLD MLKKENAKAT FFLIGSNVKA FPDLVKREDA 120
  121 EGHYVGMHSM THNYKKLYTE GHYVDEMKED QGLIAGVLGK SPVLTRPSYG SMPGLNEALR 180
  181 NKVVENGLKV WDWTIDSLDW RYNKMPVDAA SAKIVENVIN GANKPTEVIL MHDIHPQSVK 240
  241 AVPGIIKGLK EKGYELEAYS ENEHFPLNFW HDNRM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	1w1a1
Description:	Structure of Bacillus subtilis PdaA in complex with NAG, a family 4 Carbohydrate esterase.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.54926008475976	bayes_pls_golite062009
deacetylase activity	1.07373873416936	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.04159714419468	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.78725677170464	bayes_pls_golite062009
hydrolase activity	0.7139390771237	bayes_pls_golite062009
mannosidase activity	0.32530435999467	bayes_pls_golite062009
binding	0.097268039040833	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: