YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253566, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253566, gi|....

Description	E-value	Query Range	Subject Range
gi\|221317121 - gi\|221317121\|ref\|ZP_03598415.1\| transcriptional regulator [Bacillus subtilis subsp. subtilis str. JH... gi\|221312188 - gi\|221312188\|ref\|ZP_03593993.1\| transcriptional regulator [Bacillus subtilis subsp. subtilis str. NC... SP5T_BACSU - Stage V sporulation protein T OS=Bacillus subtilis GN=spoVT PE=1 SV=1 gi\|221321384 - gi\|221321384\|ref\|ZP_03602678.1\| transcriptional regulator [Bacillus subtilis subsp. subtilis str. SM... SP5T_BACSU - Stage V sporulation protein T OS=Bacillus subtilis (strain 168) GN=spoVT PE=1 SV=1	4.0E-79	[1..178]	[1..178]
gi\|206972606, gi... - gi\|206972606\|ref\|ZP_03233549.1\| stage V sporulation protein T [Bacillus cereus AH1134], gi\|206732508... gi\|228589035, gi... - gi\|229194445\|ref\|ZP_04321249.1\| Stage V sporulation protein T [Bacillus cereus m1293], gi\|228589035\|... gi\|229188340, gi... - gi\|229188340\|ref\|ZP_04315389.1\| Stage V sporulation protein T [Bacillus cereus ATCC 10876], gi\|22859... gi\|229176655, gi... - gi\|229176655\|ref\|ZP_04304060.1\| Stage V sporulation protein T [Bacillus cereus 172560W], gi\|22860682... gi\|228809078, gi... - gi\|228950603\|ref\|ZP_04112738.1\| Stage V sporulation protein T [Bacillus thuringiensis serovar kursta... gi\|228919005, gi... - gi\|228919005\|ref\|ZP_04082385.1\| Stage V sporulation protein T [Bacillus thuringiensis serovar huazho... gi\|228675714, gi... - gi\|229107741\|ref\|ZP_04237378.1\| Stage V sporulation protein T [Bacillus cereus Rock1-15], gi\|2286757... gi\|228715303, gi... - gi\|229067819\|ref\|ZP_04201137.1\| Stage V sporulation protein T [Bacillus cereus F65185], gi\|228715303... gi\|228727368, gi... - gi\|229039960\|ref\|ZP_04189724.1\| Stage V sporulation protein T [Bacillus cereus AH676], gi\|228727368\|... gi\|228956496, gi... - gi\|228956496\|ref\|ZP_04118293.1\| Stage V sporulation protein T [Bacillus thuringiensis serovar pakist... gi\|30018325, gi\|... - gi\|30018325\|ref\|NP_829956.1\| stage V sporulation protein T [Bacillus cereus ATCC 14579], gi\|29893865... gi\|218159041, gi... - gi\|218231084\|ref\|YP_002364904.1\| stage V sporulation protein T [Bacillus cereus B4264], gi\|218159041... gi\|228635006, gi... - gi\|229148464\|ref\|ZP_04276721.1\| Stage V sporulation protein T [Bacillus cereus m1550], gi\|228635006\|... gi\|42779133, gi\|... - gi\|42779133\|ref\|NP_976380.1\| stage V sporulation protein T [Bacillus cereus ATCC 10987], gi\|42735048... gi\|222093824, gi... - gi\|222093824\|ref\|YP_002527873.1\| stage V sporulation protein T [Bacillus cereus Q1], gi\|221237871\|gb... gi\|229142860, gi... - gi\|229142860\|ref\|ZP_04271303.1\| Stage V sporulation protein T [Bacillus cereus BDRD-ST24], gi\|228640... gi\|206977932, gi... - gi\|206977932\|ref\|ZP_03238819.1\| stage V sporulation protein T [Bacillus cereus H3081.97], gi\|2067438... gi\|228646566, gi... - gi\|229136901\|ref\|ZP_04265529.1\| Stage V sporulation protein T [Bacillus cereus BDRD-ST26], gi\|228646... gi\|217957630, gi... - gi\|217957630\|ref\|YP_002336172.1\| stage V sporulation protein T [Bacillus cereus AH187], gi\|217067074... gi\|228657889, gi... - gi\|229125572\|ref\|ZP_04254605.1\| Stage V sporulation protein T [Bacillus cereus BDRD-Cer4], gi\|228657...	9.0E-79	[1..178]	[1..178]
gi\|228963155, gi... - gi\|228963155\|ref\|ZP_04124325.1\| Stage V sporulation protein T [Bacillus thuringiensis serovar sotto ... gi\|228822315, gi... - gi\|228937357\|ref\|ZP_04100004.1\| Stage V sporulation protein T [Bacillus thuringiensis serovar berlin... gi\|228976813, gi... - gi\|228976813\|ref\|ZP_04137226.1\| Stage V sporulation protein T [Bacillus thuringiensis Bt407], gi\|228... gi\|75759616, gi\|... - gi\|75759616\|ref\|ZP_00739702.1\| Stage V sporulation protein T [Bacillus thuringiensis serovar israele... gi\|228789478, gi... - gi\|228970243\|ref\|ZP_04130903.1\| Stage V sporulation protein T [Bacillus thuringiensis serovar thurin... gi\|228629637, gi... - gi\|229153833\|ref\|ZP_04281964.1\| Stage V sporulation protein T [Bacillus cereus ATCC 4342], gi\|228629... gi\|228776424, gi... - gi\|228983310\|ref\|ZP_04143524.1\| Stage V sporulation protein T [Bacillus thuringiensis serovar tochig... gi\|218545790, gi... - gi\|218895190\|ref\|YP_002443601.1\| stage V sporulation protein T [Bacillus cereus G9842], gi\|218545790... gi\|52145162, gi\|... - gi\|52145162\|ref\|YP_081666.1\| stage V sporulation protein T [Bacillus cereus E33L], gi\|51978631\|gb\|AA... gi\|228860833, gi... - gi\|228898808\|ref\|ZP_04063091.1\| Stage V sporulation protein T [Bacillus thuringiensis IBL 4222], gi\|... gi\|47569903, gi\|... - gi\|47569903\|ref\|ZP_00240570.1\| stage V sporulation protein T [Bacillus cereus G9241], gi\|47553437\|gb...	2.0E-78	[1..178]	[1..178]
gi\|152022654, gi... - gi\|89202226\|ref\|ZP_01180954.1\| Transcriptional regulator AbrB [Bacillus cereus subsp. cytotoxis NVH ...	2.0E-77	[1..178]	[1..178]
gi\|52783913, gi\|... - gi\|52783913\|ref\|YP_089742.1\| SpoVT [Bacillus licheniformis ATCC 14580], gi\|52346415\|gb\|AAU39049.1\| S...	2.0E-76	[1..178]	[1..178]
gi\|89154873, gi\|... - gi\|89207193\|ref\|ZP_01185739.1\| Transcriptional regulator AbrB [Bacillus weihenstephanensis KBAB4], g... gi\|228751708, gi... - gi\|229009564\|ref\|ZP_04166791.1\| Stage V sporulation protein T [Bacillus mycoides DSM 2048], gi\|22875... gi\|229131062, gi... - gi\|229131062\|ref\|ZP_04259975.1\| Stage V sporulation protein T [Bacillus cereus BDRD-ST196], gi\|22865... gi\|229053901, gi... - gi\|229053901\|ref\|ZP_04195336.1\| Stage V sporulation protein T [Bacillus cereus AH603], gi\|228721442\|... gi\|229165043, gi... - gi\|229165043\|ref\|ZP_04292839.1\| Stage V sporulation protein T [Bacillus cereus AH621], gi\|228618428\|...	2.0E-75	[1..178]	[1..178]
gi\|25365464 - pir\|\|F83658 stage V sporulation protein T spoVT [imported] - Bacillus halodurans (strain C-125) gi\|15612633, gi\|... - gi\|15612633\|ref\|NP_240936.1\| stage V sporulation protein T [Bacillus halodurans C-125], gi\|10172682\|...	4.0E-75	[1..178]	[1..179]
gi\|229329350, gi... - gi\|229499766\|ref\|ZP_04393446.1\| transcriptional regulator, AbrB family [Geobacillus sp. Y412MC52], g... gi\|56418584, gi\|... - gi\|56418584\|ref\|YP_145902.1\| stage V sporulation protein T (transcriptional regulator) [Geobacillus ... gi\|221088004, gi... - gi\|221088004\|ref\|ZP_03557538.1\| transcriptional regulator, AbrB family [Geobacillus sp. Y412MC61], g...	8.0E-75	[1..178]	[1..178]
gi\|89084786, gi\|... - gi\|89100520\|ref\|ZP_01173381.1\| stage V sporulation protein T (transcriptional regulator) [Bacillus s...	6.0E-74	[1..177]	[1..177]
gi\|23097519, gi\|... - gi\|23097519\|ref\|NP_690985.1\| stage V sporulation protein T [Oceanobacillus iheyensis HTE831], gi\|227...	1.0E-72	[1..177]	[1..177]

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Predicted Domain #1

Region A:
Residues: [1-41]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKATGIVRRI DDLGRVVIPK EIRRTLRIRE GDPLEIFVDR D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	1yfbA
Description:	The solution structure of the N-domain of the transcription factor abrB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	1.99822727516605	bayes_pls_golite062009
nucleic acid binding	0.895355083826725	bayes_pls_golite062009
DNA binding	0.804725539181502	bayes_pls_golite062009
binding	0.55634251837907	bayes_pls_golite062009
transcription factor activity	0.538957753898077	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [42-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEVILKKYSP ISELGDFAKE YAEALYDSLG HNVLVCDRDS IIAVSGVSKK EYLNKSVGDL  60
   61 IEKTMEERKS VIMTDESDVS IIDGVTEKVH SYTVGPIVAN GDPIGAVIIF SKEAIISEIE 120
  121 HKAVNTAASF LAKQMEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.58
Match:	1vhmA
Description:	Crystal structure of an hypothetical protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.6091868632927	bayes_pls_golite062009
DNA binding	1.95399184800417	bayes_pls_golite062009
nucleic acid binding	1.92002739943412	bayes_pls_golite062009
transcription factor activity	1.78320411605201	bayes_pls_golite062009
binding	1.25785149934866	bayes_pls_golite062009
catalytic activity	0.366016769454956	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: