YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259904, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259904, gi|....

Description	E-value	Query Range	Subject Range
gi\|42740288, gi\|... - gi\|42784357\|ref\|NP_981604.1\| polysaccharide deacetylase, putative [Bacillus cereus ATCC 10987], gi\|4...	4.0E-59	[1..245]	[10..254]
gi\|65317173 - gi\|65317173\|ref\|ZP_00390132.1\| COG0726: Predicted xylanase/chitin deacetylase [Bacillus anthracis st...	6.0E-59	[1..245]	[4..248]
gi\|49481163, gi\|... - gi\|49481163\|ref\|YP_039190.1\| polysaccharide deacetylase [Bacillus thuringiensis serovar konkukian st...	7.0E-59	[1..245]	[1..245]
gi\|52140364, gi\|... - gi\|52140364\|ref\|YP_086466.1\| polysaccharide deacetylase [Bacillus cereus E33L], gi\|51973833\|gb\|AAU15...	2.0E-58	[1..245]	[1..245]
gi\|47554878, gi\|... - gi\|47568487\|ref\|ZP_00239187.1\| peptidoglycan N-acetylglucosamine deacetylase [Bacillus cereus G9241]...	6.0E-58	[1..245]	[1..245]
gi\|75762870, gi\|... - gi\|75762870\|ref\|ZP_00742684.1\| Peptidoglycan N-acetylglucosamine deacetylase [Bacillus thuringiensis...	2.0E-57	[1..245]	[27..271]
gi\|29898797, gi\|... - gi\|30023237\|ref\|NP_834868.1\| peptidoglycan N-acetylglucosamine deacetylase [Bacillus cereus ATCC 145... gi\|218232639, gi... - gi\|218232639\|ref\|YP_002369978.1\| putative polysaccharide deacetylase [Bacillus cereus B4264], gi\|218... gi\|229153358, gi... - gi\|229153358\|ref\|ZP_04281536.1\| Peptidoglycan N-acetylglucosamine deacetylase [Bacillus cereus m1550... gi\|229130449, gi... - gi\|229130449\|ref\|ZP_04259405.1\| Peptidoglycan N-acetylglucosamine deacetylase [Bacillus cereus BDRD-... gi\|229050864, gi... - gi\|229050864\|ref\|ZP_04194416.1\| Peptidoglycan N-acetylglucosamine deacetylase [Bacillus cereus AH676... gi\|228961440, gi... - gi\|228961440\|ref\|ZP_04123053.1\| Peptidoglycan N-acetylglucosamine deacetylase [Bacillus thuringiensi...	4.0E-57	[1..245]	[1..245]
gi\|89201166, gi\|... - gi\|89201166\|ref\|ZP_01179912.1\| Polysaccharide deacetylase [Bacillus cereus subsp. cytotoxis NVH 391-...	1.0E-53	[1..245]	[1..245]
gi\|89157081, gi\|... - gi\|89205067\|ref\|ZP_01183640.1\| Polysaccharide deacetylase [Bacillus weihenstephanensis KBAB4], gi\|89...	2.0E-53	[1..245]	[1..245]

Back

Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKRVFQYII LFLTITMYAS PHAGATTIPP AEHHPNTETT SSTKKIAYLT FDDGPNKYTT  60
   61 QILNILKEKN GKATFFVIGG KVPHYKKTMQ RLIKDGHYIG LHSMSHDVKR LYTGDPSALI 120
  121 TEMEQTQNIV QQVTELNTHL VRVPYGSMPY LKKNYRDALV SAQYKMWDWT IDTYDWKSYD 180
  181 NPSAILERVR NQSDEQVEVI LMHDSSVTVQ ILPQVIDYLQ SQGYKLLPYN PSSHLKVNFW 240
  241 KDTRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	2c1gA
Description:	Structure of Streptococcus pneumoniae peptidoglycan deacetylase ( SpPgdA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.54926008475976	bayes_pls_golite062009
deacetylase activity	1.07373873416936	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.04159714419468	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.78725677170464	bayes_pls_golite062009
hydrolase activity	0.7139390771237	bayes_pls_golite062009
mannosidase activity	0.32530435999467	bayes_pls_golite062009
binding	0.097268039040833	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: