YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265164, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	394 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265164, gi|....

Description	E-value	Query Range	Subject Range
PGK_BACCN - Phosphoglycerate kinase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98...	0.0	[1..394]	[1..394]
PGK_BACCZ - Phosphoglycerate kinase OS=Bacillus cereus (strain ZK / E33L) GN=pgk PE=3 SV=1	0.0	[1..394]	[1..394]
PGK_BACC1 - Phosphoglycerate kinase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=pgk PE=3 SV=1	0.0	[1..394]	[1..394]
PGK_BACHK - Phosphoglycerate kinase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=pgk PE=3 SV=1 PGK_BACHK - Phosphoglycerate kinase OS=Bacillus thuringiensis subsp. konkukian GN=pgk PE=3 SV=1	0.0	[1..394]	[1..394]
PGK_GEOKA - Phosphoglycerate kinase OS=Geobacillus kaustophilus (strain HTA426) GN=pgk PE=3 SV=1 PGK_GEOKA - Phosphoglycerate kinase OS=Geobacillus kaustophilus GN=pgk PE=3 SV=1	0.0	[1..394]	[1..394]
gi\|47555966, gi\|... - gi\|47567345\|ref\|ZP_00238058.1\| phosphoglycerate kinase [Bacillus cereus G9241], gi\|47555966\|gb\|EAL14... gi\|229094224, gi... - gi\|229094224\|ref\|ZP_04225303.1\| Phosphoglycerate kinase [Bacillus cereus Rock3-42], gi\|228689216\|gb\|...	0.0	[1..394]	[1..394]
gi\|197099640 - gi\|197099640\|ref\|NP_001127126.1\| phosphoglycerate kinase 1 [Pongo abelii] PGK1_PONPY - Phosphoglycerate kinase 1 (EC 2.7.2.3) - Pongo pygmaeus (Orangutan)	0.0	[2..393]	[5..416]
gi\|229062779, gi... - gi\|229062779\|ref\|ZP_04200084.1\| Phosphoglycerate kinase [Bacillus cereus AH603], gi\|228716539\|gb\|EEL... gi\|229014295, gi... - gi\|229014295\|ref\|ZP_04171414.1\| Phosphoglycerate kinase [Bacillus mycoides DSM 2048], gi\|228746895\|g... gi\|228613553, gi... - gi\|229169839\|ref\|ZP_04297535.1\| Phosphoglycerate kinase [Bacillus cereus AH621], gi\|228613553\|gb\|EEK... gi\|229135939, gi... - gi\|229135939\|ref\|ZP_04264700.1\| Phosphoglycerate kinase [Bacillus cereus BDRD-ST196], gi\|228647481\|g... PGK_BACWK - Phosphoglycerate kinase OS=Bacillus weihenstephanensis (strain KBAB4) GN=pgk PE=3 SV=1	0.0	[1..394]	[1..394]
gi\|89098796, gi\|... - gi\|89098796\|ref\|ZP_01171677.1\| phosphoglycerate kinase [Bacillus sp. NRRL B-14911], gi\|89086472\|gb\|E...	0.0	[1..394]	[1..394]
PGK1_PANTR - Phosphoglycerate kinase 1 OS=Pan troglodytes GN=PGK1 PE=2 SV=1 PGK1 - phosphoglycerate kinase 1 gi\|146741442 - gi\|146741442\|dbj\|BAF62377.1\| phosphoglycerate kinase 1 [Pan troglodytes verus] gi\|168279045 - gi\|168279045\|dbj\|BAG11402.1\| phosphoglycerate kinase 1 [synthetic construct]	0.0	[2..393]	[5..416]

Back

Predicted Domain #1

Region A:
Residues: [1-394]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKSIRDVD LKGKRVFCRV DFNVPMKEGK ITDETRIRAA LPTIQYLVEQ GAKVILASHL  60
   61 GRPKGQAVEE LRLTPVAARL GELLGKDVKK ADEAFGPVAQ EMVAAMNEGD VLVLENVRFY 120
  121 AGEEKNDAEL AKEFAALADI FVNDAFGAAH RAHASTAGIA DYLPAVSGLL MEKELEVLGK 180
  181 ALSNPERPFT AIIGGAKVKD KIGLIRHLLD KVDNLIIGGG LAYTFVKALG HEIGLSLCED 240
  241 DKIELAKEFM QLAKEKGVNF YMPVDVVITE EFSETATTKI VGIDSIPSNW EGVDIGPKTR 300
  301 EIYADVIKNS KLVVWNGPMG VFEMTPFAEG TKAVGQALAD AEGTYSVIGG GDSAAAVEKF 360
  361 GMADKMSHIS TGGGASLEFM EGKELPGVVC LNDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	172.0
Match:	1phpA
Description:	STRUCTURE OF THE ADP COMPLEX OF THE 3-PHOSPHOGLYCERATE KINASE FROM BACILLUS STEAROTHERMOPHILUS AT 1.65 ANGSTROMS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoglycerate kinase activity	5.4060222740811	bayes_pls_golite062009
kinase activity	5.10875323814482	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	4.75644406547116	bayes_pls_golite062009
transferase activity	3.84971620558441	bayes_pls_golite062009
catalytic activity	2.30057758519011	bayes_pls_golite062009
phosphotransferase activity, carboxyl group as acceptor	2.28472985705972	bayes_pls_golite062009
binding	2.00400587462181	bayes_pls_golite062009
ATP binding	1.2270597395465	bayes_pls_golite062009
adenyl ribonucleotide binding	1.19223643201287	bayes_pls_golite062009
adenyl nucleotide binding	1.17740080861612	bayes_pls_golite062009
transcription regulator activity	0.9898248694651	bayes_pls_golite062009
ribonucleotide binding	0.946046256290779	bayes_pls_golite062009
purine ribonucleotide binding	0.943434082819351	bayes_pls_golite062009
purine nucleotide binding	0.936146648259702	bayes_pls_golite062009
nucleotide binding	0.931721122227797	bayes_pls_golite062009
protein binding	0.206093694938779	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: