YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259607, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	645 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259607, gi|....

Description	E-value	Query Range	Subject Range
GLGB_BACCL - 1,4-alpha-glucan branching enzyme GlgB OS=Bacillus caldolyticus GN=glgB PE=1 SV=1	0.0	[1..645]	[1..642]
gi\|74492198, gi\|... - gi\|75760318\|ref\|ZP_00740367.1\| 1,4-alpha-glucan branching enzyme / Glucose-1-phosphate adenylyltran...	0.0	[1..627]	[4..630]
gi\|109150258 - gi\|109150258\|dbj\|BAE96028.1\| branching enzyme [Bacillus cereus]	0.0	[1..645]	[1..645]
gi\|229130151, gi... - gi\|229130151\|ref\|ZP_04259112.1\| 1,4-alpha-glucan-branching enzyme [Bacillus cereus BDRD-Cer4], gi\|22... gi\|228636125, gi... - gi\|229147443\|ref\|ZP_04275792.1\| 1,4-alpha-glucan-branching enzyme [Bacillus cereus BDRD-ST24], gi\|22... GLGB_BACCR - 1,4-alpha-glucan branching enzyme GlgB OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / N...	0.0	[1..645]	[1..645]
gi\|1944410 - gi\|1944410\|dbj\|BAA19588.1\| branching enzyme [Geobacillus stearothermophilus]	0.0	[1..645]	[1..641]
gi\|47555351, gi\|... - gi\|47568048\|ref\|ZP_00238754.1\| 1,4-alpha-glucan branching enzyme [Bacillus cereus G9241], gi\|4755535...	0.0	[1..645]	[16..660]
gi\|48765635 - ref\|ZP_00270185.1\| COG0296: 1,4-alpha-glucan branching enzyme [Rhodospirillum rubrum] GLGB_RHORT - 1,4-alpha-glucan branching enzyme GlgB OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM...	0.0	[6..618]	[110..732]
GLGB_RUBXD - 1,4-alpha-glucan branching enzyme GlgB OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN...	0.0	[6..620]	[99..721]
GLGB_BACC0 - 1,4-alpha-glucan branching enzyme GlgB OS=Bacillus cereus (strain AH820) GN=glgB PE=3 SV=1 gi\|196033199, gi... - gi\|196033199\|ref\|ZP_03100612.1\| 1,4-alpha-glucan branching enzyme [Bacillus cereus W], gi\|195994628\|... GLGB_BACHK - 1,4-alpha-glucan branching enzyme GlgB OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=... GLGB_BACHK - 1,4-alpha-glucan branching enzyme GlgB OS=Bacillus thuringiensis subsp. konkukian GN=glgB PE=3 SV=1	0.0	[1..645]	[1..645]
GLGB_BACC1 - 1,4-alpha-glucan branching enzyme GlgB OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=glgB PE=3...	0.0	[1..645]	[1..645]

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Predicted Domain #1

Region A:
Residues: [1-645]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVINCEEVK RDEFHTEKYY ESYNIFGAHI VTEDEMRGVR FTVWAPHAKA MSVVGDFNEW  60
   61 DYEQHKMLQV TEEGIWSLFI PHIEEREIYK YAIETMAGDV IFKADPYAVY AEVRPNTASV 120
  121 VFDIKGYEWN DKNWSRKKKK KSVYKEAMTV YELHFGSWKK KEDGTLYSYR EMAEELIPYV 180
  181 VEHQFTHIEI MPLVEHPYDR SWGYQGTGYY AATSRFGTPH DLMHFVDECH KYGIGVILDW 240
  241 VPGHFCKDAH GLYLFDGTPT YEYKDKDVQE NPVWGTVNFD LGKREVRNFL ISNALFWMRY 300
  301 FHIDGFRVDA VANMLYWNKE GQEQSNEHAV SFLRELNEAV FAEDEDFLMT AEDSTAWPLV 360
  361 TAPTYEGGLG FNYKWNMGWM NDVLKYMECA PEYRKYIHDK MTFSLLYAYS ENFILPLSHD 420
  421 EVVHGKKSLL NKMPGDYWDK FAQLRLLYGY FFTHPGKKLL FMGGEFGQFD EWKDLEDLDW 480
  481 NLHDFEMHRY MHDYFKELIA LYKRSKPLWQ LDHSREGFQW IDANNNEQSI FSFIRQGDKQ 540
  541 EDALVVVCNF TKATYENYKV GVPDFEYYNE VLNSDAEQYG GSGQVNKKRL KTFQEPYHNQ 600
  601 TAHVEITIPP FGVSILRPVK TRKGSKKQDG SKTKVRSNVT SRGKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	133.0
Match:	1m7xA
Description:	1,4-alpha-glucan branching enzyme, N-terminal domain N; 1,4-alpha-glucan branching enzyme; 1,4-alpha-glucan branching enzyme, central domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on glycosyl bonds	3.87554479203059	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	3.47174391073813	bayes_pls_golite062009
hydrolase activity	2.08746386980684	bayes_pls_golite062009
catalytic activity	1.85569074294201	bayes_pls_golite062009
phosphorylase activity	0.99159540154441	bayes_pls_golite062009
glucosidase activity	0.766503513427695	bayes_pls_golite062009
hexosaminidase activity	0.763360027922833	bayes_pls_golite062009
cation transmembrane transporter activity	0.687079660016821	bayes_pls_golite062009
sugar binding	0.52048704356718	bayes_pls_golite062009
chitinase activity	0.500233744020165	bayes_pls_golite062009
ion transmembrane transporter activity	0.498330151821515	bayes_pls_golite062009
binding	0.391406996198514	bayes_pls_golite062009
carbohydrate binding	0.31275257729319	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	0.266938437560648	bayes_pls_golite062009
beta-N-acetylhexosaminidase activity	0.263065978664289	bayes_pls_golite062009
ligand-gated ion channel activity	0.0325030313870961	bayes_pls_golite062009
ligand-gated channel activity	0.0325030313870961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: