YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21401789, gi\|...
Organism:	Bacillus anthracis str. A2012
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21401789, gi|....

Description	E-value	Query Range	Subject Range
gi\|51975150, gi\|... - gi\|52141681\|ref\|YP_085147.1\| polysaccharide deacetylase [Bacillus cereus E33L], gi\|51975150\|gb\|AAU16...	2.0E-73	[1..299]	[1..299]
gi\|47569083, gi\|... - gi\|47569083\|ref\|ZP_00239772.1\| polysaccharide deacetylase, putative [Bacillus cereus G9241], gi\|4755...	7.0E-73	[1..299]	[1..299]
gi\|49329941, gi\|... - gi\|49478385\|ref\|YP_037867.1\| polysaccharide deacetylase [Bacillus thuringiensis serovar konkukian st... gi\|196042162, gi... - gi\|196042162\|ref\|ZP_03109445.1\| putative polysaccharide deacetylase [Bacillus cereus NVH0597-99], gi...	1.0E-72	[1..299]	[1..299]
gi\|42738821, gi\|... - gi\|42782894\|ref\|NP_980141.1\| polysaccharide deacetylase, putative [Bacillus cereus ATCC 10987], gi\|4...	4.0E-72	[1..299]	[1..299]
gi\|29897451, gi\|... - gi\|30021895\|ref\|NP_833526.1\| chitooligosaccharide deacetylase [Bacillus cereus ATCC 14579], gi\|29897... gi\|228723739, gi... - gi\|229047492\|ref\|ZP_04193082.1\| Polysaccharide deacetylase [Bacillus cereus AH676], gi\|228723739\|gb\|... gi\|228799539, gi... - gi\|228960023\|ref\|ZP_04121687.1\| Polysaccharide deacetylase [Bacillus thuringiensis serovar pakistani... gi\|229146377, gi... - gi\|229146377\|ref\|ZP_04274748.1\| Polysaccharide deacetylase [Bacillus cereus BDRD-ST24], gi\|228637010... gi\|229129082, gi... - gi\|229129082\|ref\|ZP_04258055.1\| Polysaccharide deacetylase [Bacillus cereus BDRD-Cer4], gi\|228654319... gi\|228672053, gi... - gi\|229111277\|ref\|ZP_04240830.1\| Polysaccharide deacetylase [Bacillus cereus Rock1-15], gi\|228672053\|...	5.0E-72	[1..299]	[1..299]
gi\|75763847, gi\|... - gi\|75763847\|ref\|ZP_00743496.1\| Chitooligosaccharide deacetylase [Bacillus thuringiensis serovar isra... gi\|228849919, gi... - gi\|228909630\|ref\|ZP_04073453.1\| Polysaccharide deacetylase [Bacillus thuringiensis IBL 200], gi\|2288...	6.0E-72	[1..299]	[1..299]
gi\|228648874, gi... - gi\|229134613\|ref\|ZP_04263423.1\| Polysaccharide deacetylase [Bacillus cereus BDRD-ST196], gi\|22864887... gi\|163863740, gi... - gi\|89206978\|ref\|ZP_01185528.1\| Polysaccharide deacetylase [Bacillus weihenstephanensis KBAB4], gi\|89...	5.0E-69	[1..299]	[1..299]
gi\|89203734, gi\|... - gi\|89203734\|ref\|ZP_01182334.1\| Polysaccharide deacetylase [Bacillus cereus subsp. cytotoxis NVH 391-...	6.0E-64	[1..299]	[1..299]
gi\|25490444 - pir\|\|F83950 hypothetical protein BH2406 [imported] - Bacillus halodurans (strain C-125) gi\|10175026, gi\|... - gi\|15614969\|ref\|NP_243272.1\| hypothetical protein BH2406 [Bacillus halodurans C-125], gi\|10175026\|db...	6.0E-60	[26..299]	[45..318]
gi\|221313872 - gi\|221313872\|ref\|ZP_03595677.1\| hypothetical protein BsubsN3_09127 [Bacillus subtilis subsp. subtili... gi\|221318795 - gi\|221318795\|ref\|ZP_03600089.1\| hypothetical protein BsubsJ_09056 [Bacillus subtilis subsp. subtilis... gi\|221323067 - gi\|221323067\|ref\|ZP_03604361.1\| hypothetical protein BsubsS_09167 [Bacillus subtilis subsp. subtilis... YLXY_BACSU - Uncharacterized protein ylxY OS=Bacillus subtilis GN=ylxY PE=3 SV=2 YLXY_BACSU - Uncharacterized protein YlxY OS=Bacillus subtilis (strain 168) GN=ylxY PE=3 SV=2	1.0E-59	[21..297]	[40..316]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKARILAYIC IFFLYVSVGS YSVFAQDNLY EEIQKHAKQY EIAPQNAMID KIWKATPGYN  60
   61 GRQVDMEASY NNMKKLKKFD QKHLEFKEVS PSVHLEDLSP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.541	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.513	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.498	N/A	N/A	a.5.2	UBA-like
View	Download	0.489	N/A	N/A	a.39.1	EF-hand
View	Download	0.443	N/A	N/A	a.101.1	Uteroglobin-like

Predicted Domain #2

Region A:
Residues: [101-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APIYRGHPNK KMVGLTINVA WGNEYLPRIL EILKKHDVKA TFFLEGRWVK ENLRFAKMIV  60
   61 DANQEVGNHS YTHPNMKTLS SDEIRDQLQK TNRMIEAATN QKVRWFAPPS GSFRDEVVKI 120
  121 ADDFQMGTIM WTVDTIDWKR PEPDVLLQRV MRKIHPGAIV LMHPTSSTTE ALDTMITKLK 180
  181 EQGYKVGNIT ELLDEKRVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	2c1gA
Description:	Structure of Streptococcus pneumoniae peptidoglycan deacetylase ( SpPgdA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.54926008475976	bayes_pls_golite062009
deacetylase activity	1.07373873416936	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.04159714419468	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.78725677170464	bayes_pls_golite062009
hydrolase activity	0.600985675684655	bayes_pls_golite062009
mannosidase activity	0.32530435999467	bayes_pls_golite062009
binding	0.097268039040833	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: