YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263255, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	419 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263255, gi|....

Description	E-value	Query Range	Subject Range
gi\|49480121, gi\|... - gi\|49480121\|ref\|YP_037410.1\| 6-aminohexanoate-dimer hydrolase [Bacillus thuringiensis serovar konkuk...	2.0E-94	[12..419]	[12..419]
gi\|51975713, gi\|... - gi\|52142244\|ref\|YP_084585.1\| 6-aminohexanoate-dimer hydrolase [Bacillus cereus E33L], gi\|51975713\|gb...	9.0E-94	[12..419]	[12..419]
gi\|74491555, gi\|... - gi\|75760947\|ref\|ZP_00740955.1\| 6-aminohexanoate-dimer hydrolase [Bacillus thuringiensis serovar isra...	3.0E-93	[1..419]	[1..419]
gi\|47564422, gi\|... - gi\|47564422\|ref\|ZP_00235467.1\| 6-aminohexanoate-dimer hydrolase [Bacillus cereus G9241], gi\|47558574...	2.0E-92	[12..419]	[12..419]
gi\|42782363, gi\|... - gi\|42782363\|ref\|NP_979610.1\| 6-aminohexanoate-dimer hydrolase [Bacillus cereus ATCC 10987], gi\|42738...	3.0E-91	[12..419]	[12..419]
gi\|65320587 - gi\|65320587\|ref\|ZP_00393546.1\| COG1680: Beta-lactamase class C and other penicillin binding proteins...	3.0E-87	[40..419]	[2..381]
gi\|89206517, gi\|... - gi\|89206517\|ref\|ZP_01185074.1\| 6-aminohexanoate-dimer hydrolase [Bacillus weihenstephanensis KBAB4],...	7.0E-86	[1..419]	[1..419]
gi\|152024600, gi... - gi\|89199926\|ref\|ZP_01178683.1\| 6-aminohexanoate-dimer hydrolase [Bacillus cereus subsp. cytotoxis NV...	1.0E-82	[21..417]	[21..417]
gi\|113530014, gi... - gi\|116695515\|ref\|YP_841091.1\| Beta-lactamase class C [Ralstonia eutropha H16], gi\|113530014\|emb\|CAJ9...	9.0E-77	[26..414]	[62..454]
gi\|72118518, gi\|... - gi\|73541105\|ref\|YP_295625.1\| 6-aminohexanoate-dimer hydrolase [Ralstonia eutropha JMP134], gi\|721185...	7.0E-75	[17..414]	[49..449]

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Predicted Domain #1

Region A:
Residues: [1-419]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKKSPLLL LIITFIFVIT GLGFTYFKHN KTTPSKNNVT KKNWLDDPYL RWSYTHMKEF  60
   61 TLINDVKNNP DQIARFPSAL QNLDDFAVQR RFGSATPLKE LLDDNKTDAF VVVHNGQLVY 120
  121 ERYFNGYNES EPHGMASLAK VFTGAIIQSL AEENRIDLEK TADTYIKELK NTPFGKATLQ 180
  181 QLMDMQVSVE YPTHGYEHPA LENQDAQLYL ASNILPRDKN YDGPMKIYDM LQEAKETAPP 240
  241 GSVFSYNNGS TETLAWIIRT ITGKSLAENV SERIWSQIGM EENAYYVTDE TKIEQASAGL 300
  301 NATARDMARF GQLLLNNGEY NGKQILPSSI TEDIKNVQEG ELAIGPGASI SYHNQWWIPH 360
  361 NEQGAFEVLG SYGQTLYIDP KAKMVIVHFS SNATPSNEIH SVYSNMYIDI AHHLEKLPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.221849
Match:	1wybA
Description:	Structure of 6-aminohexanoate-dimer hydrolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	4.32946294126172	bayes_pls_golite062009
catalytic activity	1.85492008367309	bayes_pls_golite062009
hydrolase activity	1.54090210229297	bayes_pls_golite062009
peptidase activity	1.19769966835411	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.970277325638835	bayes_pls_golite062009
serine hydrolase activity	0.57409079045036	bayes_pls_golite062009
serine-type peptidase activity	0.568906093979048	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.449372207603742	bayes_pls_golite062009
binding	0.300295003178098	bayes_pls_golite062009
exopeptidase activity	0.150639262435765	bayes_pls_golite062009
drug binding	0.032207481128794	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: