YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263122, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	311 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263122, gi|....

Description	E-value	Query Range	Subject Range
gi\|89200134, gi\|... - gi\|89200134\|ref\|ZP_01178889.1\| Periplasmic solute binding protein [Bacillus cereus subsp. cytotoxis ...	9.0E-96	[1..311]	[1..311]
gi\|67078361, gi\|... - gi\|67078361\|ref\|YP_245979.1\| adhesion lipoprotein [Bacillus cereus E33L], gi\|66970667\|gb\|AAY60641.1\|...	2.0E-95	[1..311]	[1..311]
gi\|228793600, gi... - gi\|228966115\|ref\|ZP_04127178.1\| Manganese-binding lipoprotein mntA [Bacillus thuringiensis serovar s... gi\|75763115, gi\|... - gi\|75763115\|ref\|ZP_00742892.1\| Manganese-binding protein [Bacillus thuringiensis serovar israelensis... gi\|228901673, gi... - gi\|228901673\|ref\|ZP_04065847.1\| Manganese-binding lipoprotein mntA [Bacillus thuringiensis IBL 4222]...	9.0E-94	[1..311]	[2..312]
MTSA_STRAP - Manganese ABC transporter substrate-binding lipoprotein OS=Streptococcus anginosus GN=psaA PE=3 SV=1	8.0E-91	[3..311]	[2..309]
gi\|21401074, gi\|... - gi\|65320447\|ref\|ZP_00393406.1\| COG0803: ABC-type metal ion transport system, periplasmic component/s...	9.0E-91	[4..311]	[8..315]
MTSA_STROR - Manganese ABC transporter substrate-binding lipoprotein OS=Streptococcus oralis GN=psaA PE=3 SV=1 gi\|7579031\|gb\|AA... - PsaA [Streptococcus oralis]	1.0E-90	[3..311]	[2..309]
gi\|7920464 - gi\|7920464\|gb\|AAF70668.1\| PsaA [Streptococcus pneumoniae]	3.0E-89	[3..311]	[2..309]
gi\|222113460, gi... - gi\|222152649\|ref\|YP_002561824.1\| extracellular manganese-binding protein [Streptococcus uberis 0140J... gi\|34365045 - gi\|34365045\|emb\|CAD62183.1\| mtuA protein precursor [Streptococcus uberis]	5.0E-89	[1..311]	[1..310]

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Predicted Domain #1

Region A:
Residues: [1-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFKNVVLSI LCIFVFALTA CSSNTNGKEE GSGKLKVVTT YSIIYDMVKQ IGGEKVEIHS  60
   61 LVPIGANPHE YDPLPKDVMK MTDADMVLYN GLNLEEGGAW FKKLLKTANK SEKDAPVYKV 120
  121 SEGVEAIYLE TKGLEKEPDP HAWMNIKNGI LYAENVKKAL IKEDPKNKEF YTKNADNYVA 180
  181 ELQKLHDETV NRIHQIPEEK RFLISSEGAF KYFGKAYDIK TGYIWEINSE NQGTPDQIRD 240
  241 VVSVIQTNKV PALFVETSVD RRSMETVSKE TNVPIAGTIF TDSLGKSGED GDTYLKMMKW 300
  301 NIDTIINGLQ K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.69897
Match:	1pszA
Description:	Pneumococcal surface antigen PssA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cation transmembrane transporter activity	4.96030838349428	bayes_pls_golite062009
ion transmembrane transporter activity	4.85933409056132	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	4.64708183124764	bayes_pls_golite062009
metal ion transmembrane transporter activity	4.62870308436205	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.44345947815704	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	3.95017502365289	bayes_pls_golite062009
transporter activity	3.67298279110452	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	3.56062035963756	bayes_pls_golite062009
transmembrane transporter activity	3.28968508115123	bayes_pls_golite062009
iron ion transmembrane transporter activity	2.58786934329329	bayes_pls_golite062009
substrate-specific transporter activity	2.58693520442871	bayes_pls_golite062009
primary active transmembrane transporter activity	2.54812677397783	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	2.5446605673848	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.52703679403613	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	2.52398066978703	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	2.52350775380228	bayes_pls_golite062009
active transmembrane transporter activity	2.44277891725345	bayes_pls_golite062009
ATPase activity, coupled	1.89049387988996	bayes_pls_golite062009
ATPase activity	1.65488400668431	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.59760820263042	bayes_pls_golite062009
pyrophosphatase activity	1.52739129331837	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.50948117450196	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.50661057394414	bayes_pls_golite062009
binding	1.19129262734542	bayes_pls_golite062009
transition metal ion binding	0.515669856826557	bayes_pls_golite062009
hydrolase activity	0.278951435658903	bayes_pls_golite062009
extracellular matrix binding	0.162922764111051	bayes_pls_golite062009
cation binding	0.030562364093132	bayes_pls_golite062009
metal ion binding	0.030562364093132	bayes_pls_golite062009
ion binding	0.0283898073513612	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: