YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256033, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	607 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256033, gi|....

Description	E-value	Query Range	Subject Range
gi\|52143657, gi\|... - gi\|52143657\|ref\|YP_083171.1\| asparagine synthetase, glutamine-hydrolyzing [Bacillus cereus E33L], gi...	0.0	[1..607]	[1..607]
gi\|47557472, gi\|... - gi\|47565482\|ref\|ZP_00236523.1\| asparagine synthase (glutamine-hydrolyzing) [Bacillus cereus G9241], ...	0.0	[1..607]	[1..607]
gi\|49331878, gi\|... - gi\|49480322\|ref\|YP_035918.1\| asparagine synthetase, glutamine-hydrolyzing [Bacillus thuringiensis se...	0.0	[1..607]	[1..607]
gi\|42780898, gi\|... - gi\|42780898\|ref\|NP_978145.1\| asparagine synthetase, glutamine-hydrolyzing [Bacillus cereus ATCC 1098...	0.0	[1..607]	[1..607]
gi\|30019841, gi\|... - gi\|30019841\|ref\|NP_831472.1\| asparagine synthetase [glutamine-hydrolyzing] [Bacillus cereus ATCC 145...	0.0	[1..607]	[3..609]
gi\|75758986, gi\|... - gi\|75758986\|ref\|ZP_00739095.1\| Asparagine synthetase (glutamine-hydrolyzing) [Bacillus thuringiensis...	0.0	[1..607]	[3..609]
gi\|89156951, gi\|... - gi\|89205208\|ref\|ZP_01183780.1\| Asparagine synthase, glutamine-hydrolyzing [Bacillus weihenstephanens...	0.0	[1..607]	[1..607]
gi\|67874752, gi\|... - gi\|67874752\|ref\|ZP_00504365.1\| Asparagine synthase, glutamine-hydrolyzing [Clostridium thermocellum ...	0.0	[1..606]	[1..612]

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Predicted Domain #1

Region A:
Residues: [1-607]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGITGWVDW KEDLSNQHVI LKKMANRIQH RGPDAEGFWF SPRAAFAHRR LIVIDPEGGA  60
   61 QPKTFRAGDY TYALTYNGEI YNFRELREQL QKCGHTFETH SDTEVLLHAY LEWKEDCVQH 120
  121 LNGIFAFALW DDQKQRLFLA RDHLGVKPLF YTERNDSIIF GSEIKALLAH PSVPAEIDAD 180
  181 GINEIFGLGL FRTPGCGVFK HIEEVRAGHS ITFTRDKKVV TKYWNLESKV HTDSIEDTSS 240
  241 HILSILQDTV KRQLIADVPL VCMLSGGLDS SGITALAGKE FAAENKTLHT YSVDFVNSAK 300
  301 DFELTFARTG LDAPWVKRVS EHVGTSHHDI IVNAEELANH LFVPLRAKDL PSAGEMETSL 360
  361 YLLFCEMKKD ATVALSGESA DEVFGGYPWF HQEELLYVDK FPWLTNWKNT SPLLLHEISN 420
  421 QCNLENYIDT RFQEAILEVP TLEGESKKSA KQRQMFYLFL TRFLPFLLDR KDRMSMAVGF 480
  481 EVRVPFCDYR LVEYLWNVPF NIKSIDNIEK GILRRALKPA LPDDVRNRRK SAYPTSQDPQ 540
  541 YLQTIRHLSL DMCSNKNNPI FSLINHSTLL AIADGSNKEI NNFEARSAME YMLQVNEWLK 600
  601 TYHIHIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	1ct9A
Description:	Asparagine synthetase B, C-terminal domain; Asparagine synthetase B, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
asparagine synthase (glutamine-hydrolyzing) activity	3.86770527955716	bayes_pls_golite062009
asparaginase activity	2.94567124791739	bayes_pls_golite062009
N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity	1.2528157874993	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.17174228126736	bayes_pls_golite062009
protein binding	1.03373728327879	bayes_pls_golite062009
binding	0.541510243044181	bayes_pls_golite062009
peptidase activity	0.292459537638825	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.11980478975019	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: