YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261425, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	552 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261425, gi|....

Description	E-value	Query Range	Subject Range
gi\|30019476, gi\|... - gi\|30019476\|ref\|NP_831107.1\| 2-aminoethylphosphonate transport system permease protein phnU [Bacillu...	2.0E-55	[1..552]	[32..583]
gi\|89151063, gi\|... - gi\|89200902\|ref\|ZP_01179651.1\| Binding-protein-dependent transport systems inner membrane component ...	3.0E-55	[1..552]	[34..585]
gi\|49331628, gi\|... - gi\|49480072\|ref\|YP_035549.1\| iron ABC transporter permease [Bacillus thuringiensis serovar konkukian...	4.0E-54	[1..552]	[32..583]
gi\|51977482, gi\|... - gi\|52144013\|ref\|YP_082815.1\| iron ABC transporter permease [Bacillus cereus E33L], gi\|51977482\|gb\|AA...	4.0E-54	[1..552]	[32..583]
gi\|47566212, gi\|... - gi\|47566212\|ref\|ZP_00237240.1\| ABC transporter, permease protein VCA0601 [Bacillus cereus G9241], gi...	7.0E-54	[1..552]	[32..583]
gi\|42736431, gi\|... - gi\|42780512\|ref\|NP_977759.1\| iron compound ABC transporter, permease protein, putative [Bacillus cer...	3.0E-53	[1..552]	[32..583]
gi\|113530387, gi... - gi\|116695888\|ref\|YP_841464.1\| ABC transporter permease [Ralstonia eutropha H16], gi\|113530387\|emb\|CA...	3.0E-53	[12..551]	[75..599]
gi\|228750393, gi... - gi\|229010719\|ref\|ZP_04167916.1\| ABC transporter, permease [Bacillus mycoides DSM 2048], gi\|228750393... gi\|163861427, gi... - gi\|89204450\|ref\|ZP_01183027.1\| Binding-protein-dependent transport systems inner membrane component ...	6.0E-53	[1..552]	[34..585]
gi\|150031547, gi... - gi\|150377000\|ref\|YP_001313596.1\| binding-protein-dependent transport systems inner membrane componen...	2.0E-52	[25..551]	[158..669]
gi\|78067965, gi\|... - gi\|78067965\|ref\|YP_370734.1\| ABC Fe3+ siderophore transporter, inner membrane subunit [Burkholderia ...	5.0E-52	[8..550]	[43..570]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILAFLIMLV LPLLQLFTQA FYDKDGAFIG VANFSKYFTT PTLVQSLQNT VWVSGATTII  60
   61 AVTLAFAYAY AIARTNVFGK RVFQYIALLP LFAPTMMHGI ALTYLFGNQG LVTKGMFGLF 120
  121 EGIQIPLYGP VGIVMAEVMY TFPQAFLILL IAFQGSDYRL YEASNMLGAS KIKQFFTVTL 180
  181 PSVKYGLISA MFVVFTLSFT DFGAPKIVGG QYNVLATDVY KQVIGQQNMP MGATVGMILL 240
  241 IPAIFAFAVD RITQRKQANF LSSKA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	7.01
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	5.2155373383667	bayes_pls_golite062009
ion transmembrane transporter activity	4.56818227396155	bayes_pls_golite062009
transporter activity	4.16850252614298	bayes_pls_golite062009
transmembrane transporter activity	4.07281957844021	bayes_pls_golite062009
cation transmembrane transporter activity	3.9042503161839	bayes_pls_golite062009
active transmembrane transporter activity	3.53557366375377	bayes_pls_golite062009
primary active transmembrane transporter activity	3.41102860760524	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	3.40998687431391	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	3.39460410688414	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.39460410688414	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	3.3922219570272	bayes_pls_golite062009
substrate-specific transporter activity	3.35660988804142	bayes_pls_golite062009
ATPase activity, coupled	2.80474249103832	bayes_pls_golite062009
ATPase activity	2.58855821881295	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.57156140111438	bayes_pls_golite062009
pyrophosphatase activity	2.50452993839826	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.48616122804297	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.48393681978033	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.19359047382598	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.05679388587447	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.6718548573993	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.66281974178761	bayes_pls_golite062009
anion transmembrane transporter activity	1.33217247642075	bayes_pls_golite062009
hydrolase activity	1.33157206625923	bayes_pls_golite062009
amine transmembrane transporter activity	1.29443330825097	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.12378136769722	bayes_pls_golite062009
organic acid transmembrane transporter activity	0.79358461097433	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	0.781562616493038	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.737817335114385	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	0.694121994664275	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.634824157502542	bayes_pls_golite062009
iron ion transmembrane transporter activity	0.482351782532335	bayes_pls_golite062009
catalytic activity	0.350058049038907	bayes_pls_golite062009
sulfate transmembrane transporter activity	0.314028059232496	bayes_pls_golite062009
symporter activity	0.0914244193736007	bayes_pls_golite062009
solute:cation symporter activity	0.0914244193736007	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [266-552]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPYRITANKK RDVVSFIYCS VITLMIVLLF VAVGIAASVK VWPYNMSFTF EHFNFSSLTG  60
   61 DGLEAFKNSV IVSAVTAVIG AILTFMFAYA IEKIDQLKFF RKTGYFFSIV PLAIPGLVLG 120
  121 LGYVFFFSQP TIQIFGLSVT NPFHSLYGTI AVLVLVNIIH FYSVTFVTAT TALKKLDREF 180
  181 ELVSQSMGIP FYKTFFRVTV PMCLPAILEM VMYYFVNSMV TVSAVVFLYA ADFKLAAVSI 240
  241 VNMDDAGNVA PAAAMSVLIV VTNIVVRVVY EWGTKALRNR TSQWQKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.39794
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	5.53893649130886	bayes_pls_golite062009
ion transmembrane transporter activity	4.80599031209315	bayes_pls_golite062009
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
cation transmembrane transporter activity	4.07572277826928	bayes_pls_golite062009
active transmembrane transporter activity	3.89128503869358	bayes_pls_golite062009
primary active transmembrane transporter activity	3.78071702105421	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	3.78024819585319	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	3.76710689838502	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.76710689838502	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	3.76480875126102	bayes_pls_golite062009
substrate-specific transporter activity	3.65928254714629	bayes_pls_golite062009
ATPase activity, coupled	3.13976951511862	bayes_pls_golite062009
ATPase activity	2.90304684848114	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.85886572725081	bayes_pls_golite062009
pyrophosphatase activity	2.78799656158331	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.76854894183109	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.76635806953632	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.42763030383098	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.08437073771868	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.74937989644368	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.67980146745927	bayes_pls_golite062009
anion transmembrane transporter activity	1.61276316467788	bayes_pls_golite062009
hydrolase activity	1.52360037846731	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.44536001862407	bayes_pls_golite062009
amine transmembrane transporter activity	1.35745015743741	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	1.03950605530203	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
organic acid transmembrane transporter activity	0.86220210518613	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	0.851725653994868	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.798639167073698	bayes_pls_golite062009
sulfate transmembrane transporter activity	0.72950761930647	bayes_pls_golite062009
iron ion transmembrane transporter activity	0.604444636274578	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
catalytic activity	0.427775057748038	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	0.332859286932705	bayes_pls_golite062009
sugar transmembrane transporter activity	0.149318428666465	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: