YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261128, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	331 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261128, gi|....

Description	E-value	Query Range	Subject Range
gi\|86134306, gi\|... - gi\|86134306\|ref\|ZP_01052888.1\| zinc-binding dehydrogenase [Polaribacter sp. MED152], gi\|85821169\|gb\|...	6.0E-83	[2..328]	[10..333]
gi\|28872343, gi\|... - gi\|28872343\|ref\|NP_794962.1\| oxidoreductase, zinc-binding [Pseudomonas syringae pv. tomato str. DC30... tr\|Q87UR5\|Q87UR5... - Oxidoreductase, zinc-binding protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_523...	1.0E-81	[4..328]	[1..322]
gi\|71733591, gi\|... - gi\|71733591\|ref\|YP_272602.1\| quinone oxidoreductase [Pseudomonas syringae pv. phaseolicola 1448A], g...	1.0E-80	[4..328]	[1..322]
gi\|94417709, gi\|... - gi\|94417709\|ref\|ZP_01297526.1\| hypothetical protein PaerP_01000487 [Pseudomonas aeruginosa PA7], gi\|...	3.0E-80	[4..328]	[1..322]
gi\|77385669, gi\|... - gi\|77461666\|ref\|YP_351173.1\| zinc-containing alcohol dehydrogenase superfamily protein [Pseudomonas ...	5.0E-80	[4..328]	[1..322]
gi\|76160992 - gi\|76160992\|gb\|ABA40459.1\| NADPH quinone oxidoreductase-like protein [Solanum tuberosum]	5.0E-80	[4..329]	[1..324]
gi\|63254289, gi\|... - gi\|66043582\|ref\|YP_233423.1\| zinc-containing alcohol dehydrogenase superfamily protein [Pseudomonas ...	7.0E-80	[4..328]	[1..322]
gi\|83851394, gi\|... - gi\|83945224\|ref\|ZP_00957573.1\| probable oxidoreductase protein [Oceanicaulis alexandrii HTCC2633], g...	8.0E-80	[4..330]	[1..324]
gi\|84317897, gi\|... - gi\|84317897\|ref\|ZP_00966332.1\| COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreduct... gi\|116053381, gi... - gi\|32044610\|ref\|ZP_00141711.1\| COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreduct... gi\|107104336 - gi\|107104336\|ref\|ZP_01368254.1\| hypothetical protein PaerPA_01005411 [Pseudomonas aeruginosa PACS2]	9.0E-80	[4..328]	[1..322]
gi\|11351622 - pir\|\|A82991 probable oxidoreductase PA5234 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9951543, gi\|1... - gi\|9951543\|gb\|AAG08619.1\|AE004936_2 probable oxidoreductase [Pseudomonas aeruginosa PAO1], gi\|156004... gi\|218774565, gi... - gi\|218894336\|ref\|YP_002443206.1\| putative oxidoreductase [Pseudomonas aeruginosa LESB58], gi\|2187745... gi\|84324062, gi\|... - gi\|84324062\|ref\|ZP_00972127.1\| COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreduct...	1.0E-79	[4..328]	[1..322]

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Predicted Domain #1

Region A:
Residues: [1-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHGTCIQFH KFGNPKDVLQ VEYKNIEPLK ENEVLVRMLV RPINPSDLIP ITGAYAHRIP  60
   61 LPNIPGYEGV GIVEDVGAGV TRDLISKRVL PLRGEGTWQE YVKTSADFVV PIPDSIDDFT 120
  121 AAQMYINPLT AWVTCTETLN LQSNDVLLVN ACGSAIGHLF AQLSQILNFR FIAVTRNNKH 180
  181 TEELLSLGAA YVIDTSTAPL YETVMELTNG LGADAAIDSI GGPDGNELAF SLRPNGHFLT 240
  241 IGLLSGIQVN WAEIVTKAKV HANIFHLRHW NKEVSPYKWQ ETFRHLIRLV ENKQLRFMTV 300
  301 HSTYDLADVK AAVDVVQSAE KTKGKVFLTS Y

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.39794
Match:	1rjwA
Description:	CRYSTAL STRUCTURE OF NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILUS STRAIN LLD-R
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.17064100648825	bayes_pls_golite062009
oxidoreductase activity	1.33750895023772	bayes_pls_golite062009
fatty acid synthase activity	1.23679054027553	bayes_pls_golite062009
protein binding	1.10343691810035	bayes_pls_golite062009
chaperone binding	0.983752799796442	bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity	0.861534636764975	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.821001789062521	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.730944338975636	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	0.62461633437589	bayes_pls_golite062009
3-oxoacyl-[acyl-carrier-protein] reductase activity	0.604742541607263	bayes_pls_golite062009
alcohol dehydrogenase activity, zinc-dependent	0.558610278939188	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.527946013169731	bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity	0.233238483713519	bayes_pls_golite062009
catalytic activity	0.217171374336363	bayes_pls_golite062009
nucleic acid binding	0.100470710829263	bayes_pls_golite062009
DNA binding	0.0870043837215047	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: