YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253931, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	508 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253931, gi|....

Description	E-value	Query Range	Subject Range
gi\|51978320, gi\|... - gi\|52144851\|ref\|YP_081979.1\| prolyl-tRNA synthetase [Bacillus cereus E33L], gi\|51978320\|gb\|AAU19870....	0.0	[1..477]	[27..500]
gi\|75761526, gi\|... - gi\|75761526\|ref\|ZP_00741486.1\| Prolyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis AT...	0.0	[1..477]	[28..501]
SYP2_BACCR - Proline--tRNA ligase 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIM... gi\|228657547, gi... - gi\|229125889\|ref\|ZP_04254914.1\| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-Cer4], gi\|228657547\|g...	0.0	[1..477]	[1..474]
SYP2_BACHK - Prolyl-tRNA synthetase 2 OS=Bacillus thuringiensis subsp. konkukian GN=proS2 PE=3 SV=1 SYP2_BACHK - Proline--tRNA ligase 2 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=proS2 PE=3 SV=1	0.0	[1..477]	[1..474]
gi\|47556064, gi\|... - gi\|47567221\|ref\|ZP_00237935.1\| prolyl-tRNA synthetase [Bacillus cereus G9241], gi\|47556064\|gb\|EAL144... gi\|229137257, gi... - gi\|229137257\|ref\|ZP_04265874.1\| Prolyl-tRNA synthetase 2 [Bacillus cereus BDRD-ST26], gi\|228646252\|g... gi\|206747508, gi... - gi\|206974268\|ref\|ZP_03235185.1\| prolyl-tRNA synthetase [Bacillus cereus H3081.97], gi\|206747508\|gb\|E... gi\|217066763, gi... - gi\|217957991\|ref\|YP_002336535.1\| prolyl-tRNA synthetase [Bacillus cereus AH187], gi\|217066763\|gb\|ACJ...	0.0	[1..477]	[1..474]
SYP2_BACC1 - Proline--tRNA ligase 2 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=proS2 PE=3 SV=1	0.0	[1..477]	[1..474]
gi\|89151915, gi\|... - gi\|89199979\|ref\|ZP_01178735.1\| Prolyl-tRNA synthetase, archael and euk type [Bacillus cereus subsp. ...	0.0	[1..477]	[1..474]
gi\|163938386, gi... - gi\|89204706\|ref\|ZP_01183282.1\| Prolyl-tRNA synthetase, archael and euk type [Bacillus weihenstephane...	0.0	[1..477]	[1..474]
SYP_OCEIH - Prolyl-tRNA synthetase OS=Oceanobacillus iheyensis GN=proS PE=3 SV=1 SYP_OCEIH - Proline--tRNA ligase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)...	0.0	[3..477]	[6..476]

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Predicted Domain #1

Region A:
Residues: [1-508]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKEQVQAIT KMEEDFAQWY TDIVKKAELV DYSSVKGCMI LRPYGYALWE NMQKVMDEKL  60
   61 KATGHENVYM PMFIPESLLQ KEKDHVEGFA PEVAWVTHGG DEKLAERLCV RPTSETLFCE 120
  121 HFSKIVQSYN DLPKLYNQWC SVVRWEKTTR PFLRTTEFLW QEGHTIHETA EESQAETLNI 180
  181 LNLYASFCED YLAIPVIKGQ KTEKEKFAGA KATYTIESLM HDGKALQTGT SHNFGTNFSE 240
  241 AFDIKFLDRN GKWQYVHQTS WGVSTRMIGG LIMVHSDNNG LVMPPKVAPV QVVIVPIAQH 300
  301 KEGVLAKATE LQGHIQKVAR VKIDASNKTP GWKFNEYEMK GIPIRLEVGP KDIEKNQVVL 360
  361 VRRDTKEKEF ISMDQLEERI PALLEEIHNS LFNKAKVFRD ENTYSVTNFE EMKKLADEKQ 420
  421 GFIKAMWCGE LACEEKLKEE VASRCMPFEQ EHLAEECVCC VNKWCIGEKR INALLDRKDE 480
  481 KDFGLHNKCN PKSFLVLQFV SCIFKMEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.30103
Match:	1h4qA
Description:	Prolyl-tRNA synthetase (ProRS) domain; C-terminal domain of ProRS; Prolyl-tRNA synthetase (ProRS)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-oxygen bonds	7.20130208252979	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	7.20130208252979	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	7.18884532579969	bayes_pls_golite062009
ligase activity	6.46734856052643	bayes_pls_golite062009
proline-tRNA ligase activity	3.48471569615425	bayes_pls_golite062009
catalytic activity	2.36416267096403	bayes_pls_golite062009
phenylalanine-tRNA ligase activity	1.82630084735103	bayes_pls_golite062009
serine-tRNA ligase activity	1.67995723068335	bayes_pls_golite062009
threonine-tRNA ligase activity	1.61348476813499	bayes_pls_golite062009
histidine-tRNA ligase activity	1.44658852946316	bayes_pls_golite062009
alanine-tRNA ligase activity	1.37855221028045	bayes_pls_golite062009
lysine-tRNA ligase activity	1.2286808923607	bayes_pls_golite062009
glycine-tRNA ligase activity	1.22845858760023	bayes_pls_golite062009
asparagine-tRNA ligase activity	0.50755166961092	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: