YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253692, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	307 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253692, gi|....

Description	E-value	Query Range	Subject Range
gi\|52002847, gi\|... - gi\|52784999\|ref\|YP_090828.1\| AppB [Bacillus licheniformis ATCC 14580], gi\|52347501\|gb\|AAU40135.1\| Ap...	8.0E-64	[1..305]	[1..316]
gi\|89346610, gi\|... - gi\|89901873\|ref\|YP_524344.1\| binding-protein-dependent transport systems inner membrane component [R...	1.0E-63	[1..305]	[1..305]
gi\|51893791, gi\|... - gi\|51893791\|ref\|YP_076482.1\| oligopeptide ABC transporter permease protein [Symbiobacterium thermoph...	1.0E-63	[3..305]	[2..307]
gi\|254792025, gi... - gi\|254792025\|ref\|YP_003076862.1\| putative transport system permease protein [Escherichia coli O157:H... GSIC_ECO57 - Glutathione transport system permease protein GsiC OS=Escherichia coli O157:H7 GN=gsiC PE=3 SV=1 gi\|208732236, gi... - gi\|208815588\|ref\|ZP_03256767.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli... gi\|25296838, gi\|... - pir\|\|F90742 probable transport system permease protein ECs0910 [imported] - Escherichia coli (strain... gi\|208738100, gi... - gi\|208822615\|ref\|ZP_03262934.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli... gi\|209399916, gi... - gi\|209399916\|ref\|YP_002269498.1\| glutathione ABC transporter, permease protein GsiC [Escherichia col... gi\|15800581, gi\|... - gi\|15800581\|ref\|NP_286595.1\| putative transport system permease protein [Escherichia coli O157:H7 ED... gi\|217325168, gi... - gi\|217325168\|ref\|ZP_03441252.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli... gi\|189372981, gi... - gi\|189372981\|gb\|EDU91397.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|189377757, gi... - gi\|189377757\|gb\|EDU96173.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|195936874 - gi\|195936874\|ref\|ZP_03082256.1\| putative transport system permease protein [Escherichia coli O157:H7... gi\|208809102, gi... - gi\|208809102\|ref\|ZP_03251439.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli... gi\|189366486, gi... - gi\|189366486\|gb\|EDU84902.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|13360369, gi\|... - gi\|15830164\|ref\|NP_308937.1\| putative transport system permease protein [Escherichia coli O157:H7 st... gi\|168767339, gi... - gi\|189363341\|gb\|EDU81760.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|168776370, gi... - gi\|187768191\|gb\|EDU32035.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|189002863, gi... - gi\|189002863\|gb\|EDU71849.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|168750013, gi... - gi\|188015728\|gb\|EDU53850.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15... gi\|189356282, gi... - gi\|189356282\|gb\|EDU74701.1\| glutathione ABC transporter, permease protein GsiC [Escherichia coli O15...	1.0E-63	[1..305]	[1..305]
gi\|19918362, gi\|... - gi\|20093040\|ref\|NP_619115.1\| oligopeptide ABC transporter, permease protein [Methanosarcina acetivor...	1.0E-63	[1..304]	[1..310]
gi\|149950530, gi... - gi\|77683644\|ref\|ZP_00799090.1\| Binding-protein-dependent transport systems inner membrane component ...	2.0E-63	[1..304]	[1..305]
gi\|68526086, gi\|... - gi\|94310351\|ref\|YP_583561.1\| binding-protein-dependent transport systems inner membrane component [R...	2.0E-63	[1..305]	[1..305]
YLIC_ECOLI, GSIC... - (P75798) Inner membrane ABC transporter permease protein yliC, Glutathione permease protein gsiC - E... gi\|170519659, gi... - gi\|170681941\|ref\|YP_001742936.1\| glutathione ABC transporter, permease protein GsiC [Escherichia col... gi\|170080490, gi... - gi\|170080490\|ref\|YP_001729810.1\| permease component of a glutathione transporter [Escherichia coli s... gi\|218360185, gi... - gi\|218553417\|ref\|YP_002386330.1\| putative peptide transporter permease subunit: membrane component o... gi\|209911339, gi... - gi\|209918080\|ref\|YP_002292164.1\| putative oligopeptide ABC transporter permease component [Escherich... gi\|218688614, gi... - gi\|218688614\|ref\|YP_002396826.1\| putative peptide transporter permease subunit: membrane component o... gi\|218364504, gi... - gi\|218557735\|ref\|YP_002390648.1\| putative peptide transporter permease subunit: membrane component o... gi\|218369190, gi... - gi\|218699204\|ref\|YP_002406833.1\| putative peptide transporter permease subunit: membrane component o... gi\|218351037, gi... - gi\|218694305\|ref\|YP_002401972.1\| putative peptide transporter permease subunit: membrane component o... gi\|170020814, gi... - gi\|170020814\|ref\|YP_001725768.1\| binding-protein-dependent transport systems inner membrane componen... gi\|218704253, gi... - gi\|218704253\|ref\|YP_002411772.1\| putative peptide transporter permease subunit: membrane component o... gi\|75257571, gi\|... - gi\|75257571\|ref\|ZP_00729068.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... GSIC_ECOUT - Glutathione transport system permease protein GsiC OS=Escherichia coli (strain UTI89 / UPEC) GN=gsiC... gi\|75512836, gi\|... - gi\|75512836\|ref\|ZP_00735328.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... GSIC_ECOL5 - Glutathione transport system permease protein GsiC OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC... GSIC_SHIDS - Glutathione transport system permease protein GsiC OS=Shigella dysenteriae serotype 1 (strain Sd197)... gi\|4062408, gi\|8... - gi\|89107682\|ref\|AP_001462.1\| predicted peptide transporter subunit [Escherichia coli str. K-12 subst... gi\|83586135, gi\|... - gi\|83586135\|ref\|ZP_00924772.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... gi\|157158547, gi... - gi\|75189872\|ref\|ZP_00703139.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... gi\|75194982, gi\|... - gi\|75194982\|ref\|ZP_00705052.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... gi\|194413733, gi... - gi\|75210573\|ref\|ZP_00710721.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... gi\|190903817, gi... - gi\|75230679\|ref\|ZP_00717150.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... EG13474 - glutathione ABC transporter permease / Glutathione ABC transporter permease gi\|192957360, gi... - gi\|75236112\|ref\|ZP_00720236.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... gi\|190905982, gi... - gi\|75238164\|ref\|ZP_00722168.1\| COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems, pe... gi\|227884205, gi... - gi\|227884205\|ref\|ZP_04002010.1\| peptide transporter subunit: membrane component of ABC superfamily p... gi\|226898416, gi... - gi\|237707206\|ref\|ZP_04537687.1\| glutathione transport system permease gsiC [Escherichia sp. 3_2_53FA... gi\|238900090, gi... - gi\|238900090\|ref\|YP_002925886.1\| putative peptide transporter subunit: membrane component of ABC sup... gi\|251784350, gi... - gi\|251784350\|ref\|YP_002998654.1\| hypothetical protein B21_00815 [Escherichia coli BL21], gi\|24237662... gi\|253325210, gi... - gi\|254287722\|ref\|YP_003053470.1\| predicted peptide transporter subunit: membrane component of ABC su... gi\|253972809, gi... - gi\|254160908\|ref\|YP_003044016.1\| predicted peptide transporter subunit: membrane component of ABC su... GSIC_ECOK1 - Glutathione transport system permease protein GsiC OS=Escherichia coli O1:K1 / APEC GN=gsiC PE=3 SV=... gi\|124501392, gi... - gi\|124527047\|ref\|ZP_01698884.1\| binding-protein-dependent transport systems inner membrane component... EG13474 - glutathione ABC transporter permease / Glutathione ABC transporter permease	2.0E-63	[1..305]	[1..305]
gi\|73541614, gi\|... - gi\|73541614\|ref\|YP_296134.1\| binding-protein dependent transport system inner membrane protein [Rals...	2.0E-63	[1..305]	[1..305]
gi\|17428396 - gi\|17428396\|emb\|CAD15083.1\| probable transmembrane abc transporter protein [Ralstonia solanacearum G... gi\|17546100 - gi\|17546100\|ref\|NP_519502.1\| transmembrane ABC transporter protein [Ralstonia solanacearum GMI1000]	2.0E-63	[1..305]	[1..305]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVYVIKKLS VMVFTLWVIT TVTFLIMHII PGDPFSSDAK IFPEEVIQNM RAKYHLDEPL  60
   61 WNQYVAYLDG VVHFDFGESV QSTGQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [86-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVSEIITTGF GPSAIIGLQA LIISLLVGIA AGTFAALYHG KVIDYSVSLL AILGISIPSF  60
   61 ILAPLFIQVF AIQFELLPVA SWGTFEHTVL PSFALALGPI AVITRFVRSN MIEVLQSDYI 120
  121 KLARAKGIPI KKIIIRHALR NAIVPVLTFV GPLMAGLLTG TFVIEKIFSI PGLGKYFVDS 180
  181 IFNRDYPVIM GTTIFYSALL ILCIFITDII HRIVDPRIRS IT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.30103
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
ATPase activity, coupled to transmembrane movement of substances	7.98776119907207	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	7.98726234902655	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	7.98726234902655	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	7.97287417765536	bayes_pls_golite062009
primary active transmembrane transporter activity	7.96249144456164	bayes_pls_golite062009
active transmembrane transporter activity	7.8678894318504	bayes_pls_golite062009
ATPase activity, coupled	7.29227234008448	bayes_pls_golite062009
ATPase activity	6.94069583578738	bayes_pls_golite062009
nucleoside-triphosphatase activity	6.59903874016214	bayes_pls_golite062009
pyrophosphatase activity	6.52169210550643	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	6.50067149801529	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	6.5003333073452	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.78398318541319	bayes_pls_golite062009
ion transmembrane transporter activity	5.07829337366931	bayes_pls_golite062009
hydrolase activity	4.78607811092587	bayes_pls_golite062009
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
cation transmembrane transporter activity	4.35124450289762	bayes_pls_golite062009
substrate-specific transporter activity	3.91409799494188	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	3.2006428628965	bayes_pls_golite062009
metal ion transmembrane transporter activity	2.95360205425391	bayes_pls_golite062009
sugar transmembrane transporter activity	2.67115360425434	bayes_pls_golite062009
iron ion transmembrane transporter activity	2.58662753282402	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	2.56867883684303	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.42763030383098	bayes_pls_golite062009
maltose-transporting ATPase activity	2.14010989459818	bayes_pls_golite062009
oligosaccharide-transporting ATPase activity	2.14010989459818	bayes_pls_golite062009
oligosaccharide transmembrane transporter activity	2.14010989459818	bayes_pls_golite062009
maltose transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
disaccharide transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
glucoside transmembrane transporter activity	2.04706530621258	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.92041789093512	bayes_pls_golite062009
anion transmembrane transporter activity	1.81715503217512	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.79613658743425	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.74937989644368	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.798639167073698	bayes_pls_golite062009
sulfate transmembrane transporter activity	0.72950761930647	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
catalytic activity	0.427775057748038	bayes_pls_golite062009
maltooligosaccharide-importing ATPase activity	0.16532450344344	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: