YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260340, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260340, gi|....

Description	E-value	Query Range	Subject Range
gi\|42779231, gi\|... - gi\|42779231\|ref\|NP_976478.1\| polysaccharide deacetylase, putative [Bacillus cereus ATCC 10987], gi\|4...	1.0E-61	[1..254]	[1..254]
gi\|218540190, gi... - gi\|218901355\|ref\|YP_002449189.1\| putative polysaccharide deacetylase [Bacillus cereus AH820], gi\|218... gi\|196041121, gi... - gi\|196041121\|ref\|ZP_03108417.1\| putative polysaccharide deacetylase [Bacillus cereus NVH0597-99], gi... gi\|196046175, gi... - gi\|196046175\|ref\|ZP_03113402.1\| putative polysaccharide deacetylase [Bacillus cereus 03BB108], gi\|19... gi\|49330778, gi\|... - gi\|49479222\|ref\|YP_034501.1\| xylanase/chitin deacetylase [Bacillus thuringiensis serovar konkukian s... gi\|47570262, gi\|... - gi\|47570262\|ref\|ZP_00240913.1\| polysaccharide deacetylase family protein, putative [Bacillus cereus ... gi\|225862202, gi... - gi\|225862202\|ref\|YP_002747580.1\| putative polysaccharide deacetylase [Bacillus cereus 03BB102], gi\|2... gi\|195991422, gi... - gi\|196036053\|ref\|ZP_03103454.1\| putative polysaccharide deacetylase [Bacillus cereus W], gi\|19599142... gi\|118415142, gi... - gi\|118475917\|ref\|YP_893068.1\| xylanase/chitin deacetylase [Bacillus thuringiensis str. Al Hakam], gi... gi\|228629609, gi... - gi\|229153928\|ref\|ZP_04282058.1\| polysaccharide deacetylase pdaB [Bacillus cereus ATCC 4342], gi\|2286...	1.0E-61	[1..254]	[1..254]
gi\|75765066, gi\|... - gi\|75765066\|ref\|ZP_00744365.1\| Chitooligosaccharide deacetylase [Bacillus thuringiensis serovar isra... gi\|218895285, gi... - gi\|218895285\|ref\|YP_002443696.1\| polysaccharide deacetylase family sporulation protein PdaB [Bacillu...	3.0E-61	[1..254]	[1..254]
gi\|52145068, gi\|... - gi\|52145068\|ref\|YP_081760.1\| xylanase/chitin deacetylase [Bacillus cereus E33L], gi\|51978537\|gb\|AAU2...	3.0E-61	[1..254]	[1..254]
gi\|218163638, gi... - gi\|218235681\|ref\|YP_002364999.1\| putative polysaccharide deacetylase [Bacillus cereus B4264], gi\|218... gi\|30018419, gi\|... - gi\|30018419\|ref\|NP_830050.1\| chitooligosaccharide deacetylase [Bacillus cereus ATCC 14579], gi\|29893...	1.0E-60	[1..254]	[1..254]
gi\|89208837, gi\|... - gi\|89208837\|ref\|ZP_01187321.1\| Polysaccharide deacetylase [Bacillus weihenstephanensis KBAB4], gi\|89... gi\|229131158, gi... - gi\|229131158\|ref\|ZP_04260070.1\| polysaccharide deacetylase pdaB [Bacillus cereus BDRD-ST196], gi\|228...	1.0E-60	[1..254]	[1..254]
gi\|152022748, gi... - gi\|89203690\|ref\|ZP_01182298.1\| Polysaccharide deacetylase [Bacillus cereus subsp. cytotoxis NVH 391-...	2.0E-58	[1..253]	[1..253]
gi\|15612806, gi\|... - gi\|15612806\|ref\|NP_241109.1\| hypothetical protein BH0243 [Bacillus halodurans C-125], gi\|10172855\|db... gi\|7007436, gi\|2... - gi\|7007436\|dbj\|BAA90851.1\| YbaN [Bacillus halodurans], pir\|\|C83680 hypothetical protein BH0243 [impo...	2.0E-53	[1..254]	[1..253]
gi\|20807347 - gi\|20807347\|ref\|NP_622518.1\| predicted xylanase/chitin deacetylase [Thermoanaerobacter tengcongensis... gi\|223489865, gi... - gi\|254478273\|ref\|ZP_05091653.1\| polysaccharide deacetylase family sporulation protein PdaB, putative... gi\|20807347, gi\|... - gi\|20807347\|ref\|NP_622518.1\| xylanase/chitin deacetylase [Thermoanaerobacter tengcongensis MB4], gi\|...	8.0E-53	[22..244]	[102..321]
gi\|56418683, gi\|... - gi\|56418683\|ref\|YP_146001.1\| polysaccharide deacetylase [Geobacillus kaustophilus HTA426], gi\|563785...	8.0E-52	[10..250]	[8..247]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFFFITSKR NFKHISLIVI LSLFTAWLLF LKTYSHESAF STATGPKVIY KGDTSKKQVA  60
   61 FTFDISWGDK KAIPILDTLK ERDIKNATFF LSAAWAERHP DVVERIIKDG HEIGSMGYNY 120
  121 TSYTSLETNE IRRDLLRAQD VFTKLGVKQI KLLRPPSGDF NKATLKIAES LGYTVVHWSN 180
  181 NSNDWKNPGV NKIVSTVSNN LKGGDIVLLH ASDSALQTNK ALPLLLQKLK SDGYEQISVS 240
  241 QLISNTSTKS KDVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	2c1gA
Description:	Structure of Streptococcus pneumoniae peptidoglycan deacetylase ( SpPgdA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.54926008475976	bayes_pls_golite062009
deacetylase activity	1.07373873416936	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.04159714419468	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.78725677170464	bayes_pls_golite062009
hydrolase activity	0.7139390771237	bayes_pls_golite062009
mannosidase activity	0.32530435999467	bayes_pls_golite062009
binding	0.097268039040833	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: