YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39984997, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39984997, gi|....

Description	E-value	Query Range	Subject Range
gi\|67548364, gi\|... - gi\|67548364\|ref\|ZP_00426254.1\| Binding-protein-dependent transport systems inner membrane component ...	167.0	[0..5]	[225..570]
gi\|23100928, gi\|... - gi\|23100928\|ref\|NP_694395.1\| ABC transporter permease [Oceanobacillus iheyensis HTE831], gi\|22779163...	158.0	[0..5]	[219..206]
gi\|75700193, gi\|... - gi\|75906468\|ref\|YP_320764.1\| molybdate ABC transporter permease [Anabaena variabilis ATCC 29413], gi...	158.0	[0..6]	[225..2]
gi\|25384912 - pir\|\|AB2110 ATP-binding protein of ABC transporter alr2433 [imported] - Nostoc sp. (strain PCC 7120) gi\|17229925, gi\|... - gi\|17229925\|ref\|NP_486473.1\| ATP-binding protein of ABC transporter [Nostoc sp. PCC 7120], gi\|171315...	157.0	[0..9]	[222..5]
gi\|71672847, gi\|... - gi\|71673599\|ref\|ZP_00671347.1\| Binding-protein-dependent transport systems inner membrane component:...	155.0	[0..9]	[226..5]
gi\|62464008 - gi\|62464008\|ref\|ZP_00383312.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	150.0	[0..5]	[224..494]
gi\|10173861, gi\|... - gi\|15613808\|ref\|NP_242111.1\| hypothetical protein BH1245 [Bacillus halodurans C-125], gi\|10173861\|db... gi\|25489748 - pir\|\|E83805 hypothetical protein BH1245 [imported] - Bacillus halodurans (strain C-125)	150.0	[0..5]	[219..208]
gi\|56420657, gi\|... - gi\|56420657\|ref\|YP_147975.1\| ABC transporter (permease) [Geobacillus kaustophilus HTA426], gi\|563804...	150.0	[0..2]	[222..194]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPFTPADID AIRLSAKVAV AATVVSLPFG IAVAYVMSYL PFRGKTLVEA FLNLPLTLPP  60
   61 VVIGYLLLLL LGKKGWLGGM LNEVGIRIIF TWYAAVIASA VVGFPLLVRS IRIAMESIDE 120
  121 RLIQASRSLG AHWYDTLLTV ILPLSLRGIV AGSSLMFGRS LGEFGATIII AGNIPGVTQT 180
  181 MPLAIYEYAG SPGGEQAALT LCLVSAGLSL AVLFVHEYVG RRMMRRD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	5.78398318541319	bayes_pls_golite062009
ion transmembrane transporter activity	5.07829337366931	bayes_pls_golite062009
anion transmembrane transporter activity	4.52297088726018	bayes_pls_golite062009
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	4.26804338154829	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	4.1506718364112	bayes_pls_golite062009
primary active transmembrane transporter activity	4.00217276617164	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	3.99891866007599	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.98211391811154	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	3.97908815673888	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	3.97858487787769	bayes_pls_golite062009
substrate-specific transporter activity	3.91409799494188	bayes_pls_golite062009
cation transmembrane transporter activity	3.91336745536039	bayes_pls_golite062009
active transmembrane transporter activity	3.89128503869358	bayes_pls_golite062009
ATPase activity, coupled	3.32937863234927	bayes_pls_golite062009
ATPase activity	3.08226330066871	bayes_pls_golite062009
nucleoside-triphosphatase activity	3.00619776756793	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	2.9609821483404	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	2.9609821483404	bayes_pls_golite062009
pyrophosphatase activity	2.93295939960055	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.91418221359376	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.91133868200651	bayes_pls_golite062009
sulfate transmembrane transporter activity	2.86272063186416	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	2.7061570950411	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.42763030383098	bayes_pls_golite062009
metal ion transmembrane transporter activity	1.98807799932923	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.59729360434602	bayes_pls_golite062009
hydrolase activity	1.57867403354317	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
catalytic activity	0.427775057748038	bayes_pls_golite062009
sugar transmembrane transporter activity	0.149318428666465	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.0291867591868584	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: