YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996816, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996816, gi|....

Description	E-value	Query Range	Subject Range
CYSD_SHEAM - Sulfate adenylyltransferase subunit 2 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=cys...	240.0	[0..3]	[266..7]
CYSD_SHIDS - Sulfate adenylyltransferase subunit 2 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=cysD PE=3...	237.0	[0..4]	[266..8]
gi\|190908433, gi... - gi\|75241857\|ref\|ZP_00725676.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS... CYSD_ECOL5 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=cysD PE=...	237.0	[0..4]	[266..8]
gi\|226899658, gi... - gi\|237706618\|ref\|ZP_04537099.1\| sulfate adenylyltransferase subunit 2 [Escherichia sp. 3_2_53FAA], g... CYSD_ECOL6 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O6 GN=cysD PE=3 SV=1 CYSD_ECOK1 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O1:K1 / APEC GN=cysD PE=3 SV=1 CYSD_ECO45 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=cysD PE=3 S... gi\|227888295, gi... - gi\|227888295\|ref\|ZP_04006100.1\| sulfate adenylyltransferase subunit 2 [Escherichia coli 83972], gi\|2... CYSD_ECOUT - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli (strain UTI89 / UPEC) GN=cysD PE=3 SV=1 CYSD_ECOL6 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)...	237.0	[0..4]	[266..8]
gi\|168778737, gi... - gi\|189003606\|gb\|EDU72592.1\| sulfate adenylyltransferase, subunit 2 [Escherichia coli O157:H7 str. EC... gi\|168774713, gi... - gi\|187769603\|gb\|EDU33447.1\| sulfate adenylyltransferase, subunit 2 [Escherichia coli O157:H7 str. EC... gi\|189362058, gi... - gi\|189362058\|gb\|EDU80477.1\| sulfate adenylyltransferase, subunit 2 [Escherichia coli O157:H7 str. EC... gi\|189366850, gi... - gi\|189366850\|gb\|EDU85266.1\| sulfate adenylyltransferase, subunit 2 [Escherichia coli O157:H7 str. EC... gi\|208809539, gi... - gi\|208809539\|ref\|ZP_03251876.1\| sulfate adenylyltransferase, subunit 2 [Escherichia coli O157:H7 str... gi\|195939465 - gi\|195939465\|ref\|ZP_03084847.1\| sulfate adenylyltransferase subunit 2 [Escherichia coli O157:H7 str.... gi\|189377475, gi... - gi\|189377475\|gb\|EDU95891.1\| sulfate adenylyltransferase, subunit 2 [Escherichia coli O157:H7 str. EC... gi\|189372115, gi... - gi\|189372115\|gb\|EDU90531.1\| sulfate adenylyltransferase, subunit 2 [Escherichia coli O157:H7 str. EC... gi\|189357269, gi... - gi\|189357269\|gb\|EDU75688.1\| sulfate adenylyltransferase, subunit 2 [Escherichia coli O157:H7 str. EC... gi\|168749921, gi... - gi\|188015824\|gb\|EDU53946.1\| sulfate adenylyltransferase, subunit 2 [Escherichia coli O157:H7 str. EC... gi\|15803269, gi\|... - gi\|15803269\|ref\|NP_289301.1\| sulfate adenylyltransferase subunit 2 [Escherichia coli O157:H7 EDL933]... gi\|209761660, gi... - pir\|\|G85924 ATP sulfurylase subunit 2 [imported] - Escherichia coli (strain O157:H7, substrain EDL9... CYSD_ECO57 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O157:H7 GN=cysD PE=3 SV=1 gi\|217327896, gi... - gi\|217327896\|ref\|ZP_03443979.1\| sulfate adenylyltransferase, subunit 2 [Escherichia coli O157:H7 str... gi\|254594092, gi... - gi\|254794692\|ref\|YP_003079529.1\| sulfate adenylyltransferase, subunit 2 [Escherichia coli O157:H7 st... CYSD_ECO5E - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=cysD PE=... gi\|13363077, gi\|... - gi\|15832860\|ref\|NP_311633.1\| sulfate adenylyltransferase subunit 2 [Escherichia coli O157:H7 str. Sa... gi\|208739647, gi... - gi\|208819524\|ref\|ZP_03259844.1\| sulfate adenylyltransferase, subunit 2 [Escherichia coli O157:H7 str... gi\|208733476, gi... - gi\|208812199\|ref\|ZP_03253528.1\| sulfate adenylyltransferase, subunit 2 [Escherichia coli O157:H7 str...	237.0	[0..4]	[266..8]
CYSD_SHIFL - Sulfate adenylyltransferase subunit 2 OS=Shigella flexneri GN=cysD PE=3 SV=1 CYSD_SHIBS - Sulfate adenylyltransferase subunit 2 OS=Shigella boydii serotype 4 (strain Sb227) GN=cysD PE=3 SV=1 gi\|24053171, gi\|... - gi\|24114047\|ref\|NP_708557.1\| sulfate adenylyltransferase subunit 2 [Shigella flexneri 2a str. 301], ... gi\|30042365, gi\|... - gi\|30064109\|ref\|NP_838280.1\| sulfate adenylyltransferase subunit 2 [Shigella flexneri 2a str. 2457T]...	237.0	[0..4]	[266..8]
gi\|226839419, gi... - gi\|254037795\|ref\|ZP_04871853.1\| sulfate adenylyltransferase subunit 2 [Escherichia sp. 1_1_43], gi\|2... gi\|253974584, gi... - gi\|254162683\|ref\|YP_003045791.1\| sulfate adenylyltransferase subunit 2 [Escherichia coli B str. REL6... CYSD_ECODH - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli (strain K12 / DH10B) GN=cysD PE=3 SV=1 gi\|190903164, gi... - gi\|75230037\|ref\|ZP_00716547.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS... CYSD_ECO8A - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O8 (strain IAI1) GN=cysD PE=3 SV=1 gi\|75235649, gi\|... - gi\|75235649\|ref\|ZP_00719823.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS... CYSD_ECOSM - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=cysD PE=3 SV=1 CYSD_ECO7I - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=cysD PE=3 ... gi\|194438981, gi... - gi\|83585589\|ref\|ZP_00924232.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS... CYSD_ECO55 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli (strain 55989 / EAEC) GN=cysD PE=3 SV=1 gi\|124531497, gi... - gi\|124531497\|ref\|ZP_01701751.1\| sulfate adenylyltransferase, small subunit [Escherichia coli B], gi\|... CYSD_ECOLC - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=... EG10186 - sulfate adenylyltransferase, subunit 2 / Sulfate adenylyltransferase subunit 2 EG10186 - sulfate adenylyltransferase, subunit 2 / Sulfate adenylyltransferase subunit 2 CYSD_ECOLI - Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfur... gi\|89109539, gi\|... - gi\|89109539\|ref\|AP_003319.1\| sulfate adenylyltransferase, subunit 2 [Escherichia coli str. K-12 subs... gi\|188487978, gi... - gi\|75512337\|ref\|ZP_00734889.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS... CYSD_SHISS - Sulfate adenylyltransferase subunit 2 OS=Shigella sonnei (strain Ss046) GN=cysD PE=3 SV=1 CYSD_ECOBW - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=cysD PE=... gi\|242378307, gi... - gi\|251786034\|ref\|YP_003000338.1\| hypothetical protein B21_02567 [Escherichia coli BL21], gi\|24237830... gi\|254289444, gi... - gi\|254289444\|ref\|YP_003055192.1\| sulfate adenylyltransferase subunit 2 [Escherichia coli BL21(DE3)],...	237.0	[0..4]	[266..8]
gi\|192927333, gi... - gi\|75256958\|ref\|ZP_00728534.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS... gi\|194427900, gi... - gi\|75210959\|ref\|ZP_00711083.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS... CYSD_ECO24 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=cysD P... gi\|170765520, gi... - gi\|170765520\|ref\|ZP_02900331.1\| sulfate adenylyltransferase, subunit 2 [Escherichia albertii TW07627... CYSD_ECOSE - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli (strain SE11) GN=cysD PE=3 SV=1 sp\|B7UHH1\|CYSD_ECO27 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=cysD P... CYSD_ECO81 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O81 (strain ED1a) GN=cysD PE=3 SV=1 CYSD_ECOLU - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=cys... CYSD_ECO27 - Sulfate adenylyltransferase subunit 2 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=cysD P... CYSD_ESCF3 - Sulfate adenylyltransferase subunit 2 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC... CYSD_SHIF8 - Sulfate adenylyltransferase subunit 2 OS=Shigella flexneri serotype 5b (strain 8401) GN=cysD PE=3 SV...	237.0	[0..4]	[266..8]
gi\|238718997, gi... - gi\|77962830\|ref\|ZP_00826646.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS... gi\|238725173, gi... - gi\|77976018\|ref\|ZP_00831551.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS... gi\|77979620, gi\|... - gi\|77979620\|ref\|ZP_00835037.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS...	237.0	[0..4]	[266..8]
CYSD_SHEFN - Sulfate adenylyltransferase subunit 2 OS=Shewanella frigidimarina (strain NCIMB 400) GN=cysD PE=3 SV...	236.0	[0..3]	[266..7]

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Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSHLDELEA QSIYIFREAY RKFENLAMLY SVGKDSTTMI HLARKAFFGR IPFPLVHIDT  60
   61 TYKYPEMIEY RDRMAREWGA DLIVGRNESA IAAGTGPEQG RLDCCAKLKT DGLSQTIERH 120
  121 GFNGLFLGIR RDEEGSRAKE RVFSPRDKNF EWSYKDQPPE LWDQFNTTFA PGTHIRVHPI 180
  181 LHWTELDIWL YIQREGIELC PLYFARDGKR FRSLGCMPCT GPIQSNAVTV EEIIEELRAI 240
  241 KTPERAGRAQ DQENTYAMQK LRAKGYM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.69897
Match:	1zunA
Description:	Crystal Structure of a GTP-Regulated ATP Sulfurylase Heterodimer from Pseudomonas syringae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity	1.34640449962741	bayes_pls_golite062009
catalytic activity	1.19930793139888	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.196167461233561	bayes_pls_golite062009
sulfate adenylyltransferase activity	0.157667990585829	bayes_pls_golite062009
asparagine synthase (glutamine-hydrolyzing) activity	0.0567787332370804	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: