YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995196, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995196, gi|....

Description	E-value	Query Range	Subject Range
gi\|88918828, gi\|... - gi\|88934370\|ref\|ZP_01140013.1\| heterodisulfide reductase, cytochrome reductase subunit [Geobacter ur...	261.0	[0..1]	[280..1]
gi\|78195876, gi\|... - gi\|78224621\|ref\|YP_386368.1\| oxidoreductase FAD/NAD(P)-binding protein [Geobacter metallireducens GS...	256.0	[0..1]	[280..1]
gi\|110547515, gi... - gi\|222056796\|ref\|YP_002539158.1\| oxidoreductase FAD/NAD(P)-binding domain protein [Geobacter sp. FRC...	255.0	[0..1]	[280..1]
gi\|563906 - gi\|563906\|emb\|CAA53035.1\| hydrogenase (gamma subunit) [Pyrococcus furiosus] gi\|563906 - gi\|563906\|emb\|CAA53035.1\| hydrogenase (gamma subunit) [Pyrococcus furiosus DSM 3638]	244.0	[0..1]	[277..7]
gi\|46450224, gi\|... - gi\|46580804\|ref\|YP_011612.1\| hydrogenase, putative [Desulfovibrio vulgaris subsp. vulgaris str. Hild...	244.0	[0..5]	[279..10]
gi\|120601879, gi... - gi\|120601879\|ref\|YP_966279.1\| oxidoreductase FAD/NAD(P)-binding subunit [Desulfovibrio vulgaris subs...	243.0	[0..5]	[279..22]
gi\|78220974, gi\|... - gi\|78358569\|ref\|YP_390018.1\| hydrogenase, putative [Desulfovibrio desulfuricans subsp. desulfuricans...	242.0	[0..3]	[279..4]
gi\|7451847 - pir\|\|H71074 probable cytochrome-c3 hydrogenase gamma chain - Pyrococcus horikoshii gi\|14591102, gi\|... - gi\|3257711\|dbj\|BAA30394.1\| 292aa long hypothetical cytochrome-c3 hydrogenase gamma chain [Pyrococcus...	242.0	[0..1]	[277..8]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDHKNIYLP HLATIEEIVD ETPDIRTFRL VFQDERVREH FTFRAGQFAE YSAFGAGEAT  60
   61 FCIASAPTRQ GYIECCFRAV GRVTEALRSL ETGDTIGVRG PYGNSFPVEE FFGKNLVFVA 120
  121 GGIALPPLRT LIWQCLDWRE KFGDITIVYG ARTEADLVYK RELREWEERS DVRLVKTVDP 180
  181 GGNSPSWDGQ VGFVPTVLEQ AAPAADNTIA LVCGPPVMIK FTLPVLEKLG FADTAIYTTL 240
  241 ENRMKCGLGK CGRCNVGNVY VCKDGPVFTA AQVKAMPQEF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.39794
Match:	1i7pA
Description:	cytochrome b5 reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on NADH or NADPH	2.17131762374629	bayes_pls_golite062009
oxidoreductase activity	1.62887351117368	bayes_pls_golite062009
FAD binding	1.52396930250678	bayes_pls_golite062009
catalytic activity	1.45374095556065	bayes_pls_golite062009
coenzyme binding	1.17309001156953	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor	1.00842465128414	bayes_pls_golite062009
cytochrome-b5 reductase activity	0.806503288370719	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	0.572555676834193	bayes_pls_golite062009
NADP or NADPH binding	0.546101655162487	bayes_pls_golite062009
dihydroorotate dehydrogenase activity	0.448800468062749	bayes_pls_golite062009
riboflavin synthase activity	0.380537461428523	bayes_pls_golite062009
ferredoxin reductase activity	0.373775944541733	bayes_pls_golite062009
ferredoxin-NADP+ reductase activity	0.373775944541733	bayes_pls_golite062009
oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor	0.373775944541733	bayes_pls_golite062009
FMN binding	0.322916408288047	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	0.037885603526826	bayes_pls_golite062009
transferase activity	0.00498326987177106	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: