YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541633, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541633, gi|....

Description	E-value	Query Range	Subject Range
gi\|75907071, gi\|... - gi\|75907071\|ref\|YP_321367.1\| glycosyl transferase family protein [Anabaena variabilis ATCC 29413], g...	156.0	[0..1]	[211..1]
gi\|71670796, gi\|... - gi\|71675935\|ref\|ZP_00673678.1\| Glycosyl transferase, family 2 [Trichodesmium erythraeum IMS101], gi\|...	154.0	[0..4]	[231..1]
gi\|17230555, gi\|... - gi\|17230555\|ref\|NP_487103.1\| hypothetical protein alr3063 [Nostoc sp. PCC 7120], gi\|17132157\|dbj\|BAB... gi\|25534579 - pir\|\|AH2188 hypothetical protein alr3063 [imported] - Nostoc sp. (strain PCC 7120)	151.0	[0..1]	[211..1]
gi\|71743199, gi\|... - gi\|71836369\|ref\|ZP_00676138.1\| Glycosyl transferase, family 2:Radical SAM [Pelobacter propionicus DS...	150.0	[0..2]	[231..623]
gi\|32475998, gi\|... - gi\|32475998\|ref\|NP_868992.1\| glycosyl transferase [Rhodopirellula baltica SH 1], gi\|32446542\|emb\|CAD...	149.0	[0..2]	[232..56]
gi\|187028529, gi... - gi\|39587882\|emb\|CAE67900.1\| Hypothetical protein CBG13497 [Caenorhabditis briggsae], gi\|187028529\|em... gi\|157759407 - gi\|157759407\|ref\|XP_001672047.1\| Hypothetical protein CBG13497 [Caenorhabditis briggsae AF16]	149.0	[0..5]	[227..3]
gi\|5042285, gi\|2... - gi\|5042285\|emb\|CAB44539.1\| putative bi-functional transferase/deacetylase [Streptomyces coelicolor A... gi\|7480519 - pir\|\|T34632 probable bi-functional transferase/deacetylase - Streptomyces coelicolor	149.0	[0..8]	[234..389]

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Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPLHSDIAV IIPAYNEQAS IRSIVEPIFS FTDKVIIVDD GSTDATAAQL SDLPAIIIKN  60
   61 LINQGKGASL MRGFQHLQQL KVRAAICMDA DTQHDPQDIP KFIEAMNEYP NHIIIGARTH 120
  121 NAENAPKMRR RANQVADFFI SWAAGQRIID TQSGYRLYPI EFLQNCLHQL RSQRFAFESE 180
  181 MLIQAARQGY LPVSISIQSH YPKNLRPSHY KPFIDTVKIT AMVSWKLLSR GLYLAGLFRT 240
  241 LFKKRNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.39794
Match:	1xhbA
Description:	The Crystal Structure of UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase-T1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
mannosyltransferase activity	3.87594044828967	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.70047942699289	bayes_pls_golite062009
transferase activity	2.62166586999833	bayes_pls_golite062009
UDP-glycosyltransferase activity	2.33861720107822	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.01768771829228	bayes_pls_golite062009
catalytic activity	1.88676710996045	bayes_pls_golite062009
alpha-1,2-mannosyltransferase activity	1.53617752123292	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	1.33788133706753	bayes_pls_golite062009
cytidylyltransferase activity	1.14240569193314	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	1.10309252319727	bayes_pls_golite062009
nucleotidyltransferase activity	1.03393419806381	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.897978517422275	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.412018910498896	bayes_pls_golite062009
uridylyltransferase activity	0.321928989676507	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.2363835251362	bayes_pls_golite062009
binding	0.074398891333042	bayes_pls_golite062009
acetylglucosaminyltransferase activity	0.0562130308868509	bayes_pls_golite062009
guanylyltransferase activity	0.0539392112504681	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.0122078907283503	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: