YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376330, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	342 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376330, gi|....

Description	E-value	Query Range	Subject Range
gi\|237707059, gi... - gi\|237707059\|ref\|ZP_04537540.1\| outer membrane protein A [Escherichia sp. 3_2_53FAA], gi\|226898269\|g... gi\|91210052, gi\|... - gi\|91210052\|ref\|YP_540038.1\| outer membrane protein A [Escherichia coli UTI89], gi\|91071626\|gb\|ABE06...	252.0	[0..1]	[342..30]
gi\|117623167, gi... - gi\|117623167\|ref\|YP_852080.1\| outer membrane protein A [Escherichia coli APEC O1], gi\|115512291\|gb\|A...	252.0	[0..1]	[342..25]
gi\|110342738, gi... - gi\|110641146\|ref\|YP_668876.1\| outer membrane protein A [Escherichia coli 536], gi\|110342738\|gb\|ABG68...	251.0	[0..1]	[342..1]
gi\|74311514, gi\|... - gi\|74311514\|ref\|YP_309933.1\| outer membrane protein A [Shigella sonnei Ss046], gi\|73854991\|gb\|AAZ876... gi\|254792157, gi... - gi\|254792157\|ref\|YP_003076994.1\| outer membrane protein A (3a;II;G;d) [Escherichia coli O157:H7 str... gi\|75195146, gi\|... - gi\|75195146\|ref\|ZP_00705216.1\| COG2885: Outer membrane protein and related peptidoglycan-associated ... gi\|170080615, gi... - gi\|170080615\|ref\|YP_001729935.1\| outer membrane protein A (3a;II;G;d) [Escherichia coli str. K-12 s... gi\|188493530, gi... - gi\|75513410\|ref\|ZP_00735814.1\| COG2885: Outer membrane protein and related peptidoglycan-associated ... gi\|187730326, gi... - gi\|187730326\|ref\|YP_001880845.1\| outer membrane protein A [Shigella boydii CDC 3083-94], gi\|18742731... gi\|209911468, gi... - gi\|209918209\|ref\|YP_002292293.1\| outer membrane protein A [Escherichia coli SE11], gi\|209911468\|dbj\|... gi\|218351164, gi... - gi\|218694432\|ref\|YP_002402099.1\| outer membrane protein A [Escherichia coli 55989], gi\|218351164\|emb... OMPA_ECOLI - Outer membrane protein A precursor (Outer membrane protein II) - Escherichia coli gi\|32329155 - gi\|32329155\|gb\|AAP74759.1\| outer membrane protein A precursor [Shigella sonnei] OMPA_ECO57 - Outer membrane protein A OS=Escherichia coli O157:H7 GN=ompA PE=3 SV=1 EG10669 - outer membrane protein A (3a;II;G;d) / Outer membrane protein A; Outer membrane porin A; T-even pha... gi\|15800816, gi\|... - gi\|15800816\|ref\|NP_286832.1\| outer membrane protein A [Escherichia coli O157:H7 EDL933], gi\|12514142... gi\|1651465, gi\|8... - gi\|89107807\|ref\|AP_001587.1\| outer membrane protein A (3a;II;G;d) [Escherichia coli str. K-12 subst... EG10669 - outer membrane protein A (3a;II;G;d) / Outer membrane protein A; Outer membrane porin A; T-even pha... gi\|13360501, gi\|... - gi\|15830295\|ref\|NP_309068.1\| outer membrane protein A [Escherichia coli O157:H7 str. Sakai], gi\|1336... gi\|238900215, gi... - gi\|238900215\|ref\|YP_002926011.1\| outer membrane protein A (3a;II;G;d) [Escherichia coli BW2952], gi... gi\|242376772, gi... - gi\|251784499\|ref\|YP_002998803.1\| hypothetical protein B21_00968 [Escherichia coli BL21], gi\|24237677... gi\|253325058, gi... - gi\|254287879\|ref\|YP_003053627.1\| outer membrane protein A (3a;II;G;d) [Escherichia coli BL21(DE3)],... gi\|253972972, gi... - gi\|254161071\|ref\|YP_003044179.1\| outer membrane protein A (3a;II*;G;d) [Escherichia coli B str. REL6...	251.0	[0..1]	[342..1]
gi\|51235578 - gi\|51235578\|gb\|AAT98590.1\| outer membrane protein A [Escherichia coli]	251.0	[0..1]	[342..1]
gi\|26107378, gi\|... - gi\|26246978\|ref\|NP_753018.1\| outer membrane protein A [Escherichia coli CFT073], gi\|26107378\|gb\|AAN7...	250.0	[0..1]	[342..30]
gi\|46812309 - gi\|46812309\|gb\|AAT02227.1\| outer membrane protein A precursor [Shigella boydii]	250.0	[0..1]	[342..1]
gi\|72587, gi\|758341 - gi\|758341\|emb\|CAA26037.1\| outer membrane protein (ompA) [Salmonella typhimurium], pir\|\|MMEBAT outer ... gi\|758341\|emb\|CA... - outer membrane protein (ompA) [Salmonella typhimurium]	248.0	[0..1]	[342..1]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYKLILLTF LPFSFSTLAS EPPSYLPFQS YWYAGAGLGQ GHYSNGSNPQ SYDSVRDRFA  60
   61 GSVYLGYQVN PYLAPELSYQ FLGSAYANYE QGQISGDFQQ VVLAARFGYP LTTSLYPYVK 120
  121 VGGAGWFGDS EGLRSGSERG FSPIVAAGVE YAFTPRLSGR LEHQYTDSLG ADSIGYTDHH 180
  181 LTTLGLSWRF GHSAPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.154902
Match:	1qjpA
Description:	Outer membrane protein A (OMPA) transmembrane domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
porin activity	5.10991724700971	bayes_pls_golite062009
channel activity	4.78965126968592	bayes_pls_golite062009
passive transmembrane transporter activity	4.78965126968592	bayes_pls_golite062009
wide pore channel activity	3.92328965238944	bayes_pls_golite062009
transporter activity	2.94995161862691	bayes_pls_golite062009
transmembrane transporter activity	2.84443650880263	bayes_pls_golite062009
receptor activity	1.96745124806322	bayes_pls_golite062009
signal transducer activity	1.14131647544827	bayes_pls_golite062009
molecular transducer activity	1.14131647544827	bayes_pls_golite062009
binding	0.881171786743586	bayes_pls_golite062009
protein binding	0.251915221742479	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [197-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAPTPEVVTQ VVELPPVVQI VEKRQFVYSE QKGNSLLFAH NSSVLNNTSQ FADVVSFLKQ  60
   61 HPTASAVITG HTDSTGSDKY NQWLSERRAI SVANYLVSQG VQSAQLTSVG KGETASVADN 120
  121 TTENGRAMNR RVEITIPEFT VTKTVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	2hqsH
Description:	No description for 2hqsH was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: