YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375993, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	685 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375993, gi|....

Description	E-value	Query Range	Subject Range
gi\|25318830 - pir\|\|AC2079 ferrichrome-iron receptor [imported] - Nostoc sp. (strain PCC 7120) gi\|17229677, gi\|... - gi\|17229677\|ref\|NP_486225.1\| ferrichrome-iron receptor [Nostoc sp. PCC 7120], gi\|17131276\|dbj\|BAB738...	329.0	[0..11]	[685..166]
gi\|113886738, gi... - gi\|82497120\|ref\|ZP_00882679.1\| ferric vibriobactin receptor [Shewanella sp. MR-4], gi\|82404833\|gb\|EA...	318.0	[0..1]	[685..1]
gi\|114049284, gi... - gi\|78689179\|ref\|ZP_00853843.1\| ferric vibriobactin receptor [Shewanella sp. MR-7], gi\|78511336\|gb\|EA...	318.0	[0..1]	[685..1]
gi\|11351573 - pir\|\|A83043 probable outer membrane protein PA4837 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9951106, gi\|1... - gi\|9951106\|gb\|AAG08222.1\|AE004896_12 probable outer membrane protein precursor [Pseudomonas aerugino...	317.0	[0..6]	[685..1]
gi\|77814913, gi\|... - gi\|77814913\|ref\|ZP_00814163.1\| TonB-dependent receptor [Shewanella putrefaciens CN-32], gi\|77810087\|...	317.0	[0..1]	[685..1]
gi\|82741663, gi\|... - gi\|82741663\|ref\|ZP_00904379.1\| ferric vibriobactin receptor [Shewanella sp. W3-18-1], gi\|82720970\|gb...	317.0	[0..1]	[685..1]
gi\|115588206, gi... - gi\|116052985\|ref\|YP_793303.1\| putative uter membrane protein precursor [Pseudomonas aeruginosa UCBPP...	317.0	[0..6]	[685..1]
gi\|78507712, gi\|... - gi\|78684380\|ref\|ZP_00849164.1\| ferric vibriobactin receptor [Shewanella sp. ANA-3], gi\|78507712\|gb\|E...	316.0	[0..1]	[685..1]
gi\|91791983, gi\|... - gi\|91791983\|ref\|YP_561634.1\| TonB-dependent receptor [Shewanella denitrificans OS217], gi\|91713985\|g...	315.0	[0..1]	[685..1]

Back

Predicted Domain #1

Region A:
Residues: [1-685]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCKAFKKST IAAIVSSLLI SSAYAAADAE SSEPIERITV YGEKIERSLK DTTSSISVID  60
   61 KETLDSGQYQ STSSALSEVP NVVVLSGSVP DIRGVSGNGS ASGFNSFTGG ARARVSTLVD 120
  121 GVAEPFVADL SGDTGLWDIQ QIEVFRGPQS TINGRNSIGG TVFIKTEDPT FDWQGAARVG 180
  181 YRDQDNFIDS AVMLSGPILD DELAFRVSGQ NVTGETYNKG LEYPTNPATF DQNELITNRW 240
  241 RGKFLWQPSA IEDLKVLYSL SYNDEKGDSG RNYFTGDDPW AYKPIFQRYI ETKSTTHSVK 300
  301 VDYELGEGQA FDLIVAYMDY NWGFESYEAL ATAQQYVDMK DKSYTVDGKY SFGLKDKDFN 360
  361 GFVGLAYFKR SQDFGSTGSS IYSGDDSTKS ASVYGEVTYG LADSLWITVG GRVMREEQLR 420
  421 NFTMLYQGSQ LLEKLDDANT VTLPKLVLQY ALNDNTTLAA SVRRGYNSGG GALSLVESEY 480
  481 YYYDEEFVNT YELSSRSAFA NGDVNLSANL FYNDFDGYQA SNSARKITNI DKAVSYGVEA 540
  541 EFSAMLTENW QFISGVGLLD SEIKQADPSY GDIIGNQLNS APHVTANAGL KYWLSDAFSF 600
  601 GFAGHYVGEY FADINNTESR VAGDYVVARV SLDYQTDSWR VSGFVNNLFD EQAMTVNEPA 660
  661 SRSYPDGYAA IIDPRNIGVS AMYRF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.30103
Match:	1by3A
Description:	Ferric hydroxamate uptake receptor FhuA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	4.15398171369398	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	3.71720155502729	bayes_pls_golite062009
metal ion transmembrane transporter activity	3.51478170290895	bayes_pls_golite062009
cation transmembrane transporter activity	3.41811856763345	bayes_pls_golite062009
ion transmembrane transporter activity	3.35817595849318	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.29933669641504	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.88478677770584	bayes_pls_golite062009
iron ion transmembrane transporter activity	2.78006545332604	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	2.64234123687059	bayes_pls_golite062009
substrate-specific transporter activity	2.43332676180972	bayes_pls_golite062009
transmembrane transporter activity	1.99898520864149	bayes_pls_golite062009
binding	0.895613726661701	bayes_pls_golite062009
channel activity	0.491712690153616	bayes_pls_golite062009
passive transmembrane transporter activity	0.491712690153616	bayes_pls_golite062009
iron ion binding	0.248363677949459	bayes_pls_golite062009
protein binding	0.230368843489798	bayes_pls_golite062009
lipid transporter activity	0.10911346172326	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: