YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375925, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375925, gi|....

Description	E-value	Query Range	Subject Range
gi\|67548364, gi\|... - gi\|67548364\|ref\|ZP_00426254.1\| Binding-protein-dependent transport systems inner membrane component ...	160.0	[0..2]	[219..573]
gi\|75700193, gi\|... - gi\|75906468\|ref\|YP_320764.1\| molybdate ABC transporter permease [Anabaena variabilis ATCC 29413], gi...	160.0	[0..1]	[224..3]
gi\|25384912 - pir\|\|AB2110 ATP-binding protein of ABC transporter alr2433 [imported] - Nostoc sp. (strain PCC 7120) gi\|17229925, gi\|... - gi\|17229925\|ref\|NP_486473.1\| ATP-binding protein of ABC transporter [Nostoc sp. PCC 7120], gi\|171315...	159.0	[0..1]	[224..3]
gi\|23100928, gi\|... - gi\|23100928\|ref\|NP_694395.1\| ABC transporter permease [Oceanobacillus iheyensis HTE831], gi\|22779163...	156.0	[0..3]	[213..210]
gi\|23129877, gi\|... - gi\|23129877\|ref\|ZP_00111700.1\| COG1118: ABC-type sulfate/molybdate transport systems, ATPase compone...	151.0	[0..1]	[226..3]
gi\|71672847, gi\|... - gi\|71673599\|ref\|ZP_00671347.1\| Binding-protein-dependent transport systems inner membrane component:...	150.0	[0..1]	[221..3]
gi\|7445979 - pir\|\|S77084 ABC-type transport protein sll0739 - Synechocystis sp. (strain PCC 6803) gi\|1006620, gi\|1... - gi\|16331977\|ref\|NP_442705.1\| ABC transporter [Synechocystis sp. PCC 6803], gi\|1006620\|dbj\|BAA10776.1...	148.0	[0..3]	[223..5]
gi\|56420657, gi\|... - gi\|56420657\|ref\|YP_147975.1\| ABC transporter (permease) [Geobacillus kaustophilus HTA426], gi\|563804...	147.0	[0..2]	[216..200]

Back

Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWQALWLSV KLSSITVLVL VPLSILAGRA LAYRQFIGKS WVEALIMVPL VLPPTVIGYY  60
   61 LLVGLGSQSW LGQWLERLTG QQLVFHFSGL VLASVLVNIP FALQPIQRAF EAVPHDVRDA 120
  121 AACCGMSKLK ILLKIELPMV WPGVLTAIVL CFSHVLGEFG VVLMMGGNIA GETKTISISI 180
  181 YDSVQAFDFG AAGTMSLVLL LFAITALALT TSLSRRLGGQ RGANHR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	5.53893649130886	bayes_pls_golite062009
ion transmembrane transporter activity	4.80599031209315	bayes_pls_golite062009
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
anion transmembrane transporter activity	4.31857901976294	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	3.91726681273811	bayes_pls_golite062009
active transmembrane transporter activity	3.89128503869358	bayes_pls_golite062009
primary active transmembrane transporter activity	3.78071702105421	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	3.78024819585319	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.76710689838502	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	3.76710689838502	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	3.76480875126102	bayes_pls_golite062009
substrate-specific transporter activity	3.65928254714629	bayes_pls_golite062009
cation transmembrane transporter activity	3.63784573073205	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	3.6315875770239	bayes_pls_golite062009
ATPase activity, coupled	3.13976951511862	bayes_pls_golite062009
ATPase activity	2.90304684848114	bayes_pls_golite062009
sulfate transmembrane transporter activity	2.86272063186416	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.85886572725081	bayes_pls_golite062009
pyrophosphatase activity	2.78799656158331	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.76854894183109	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.76635806953632	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	2.50273280026255	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	2.50273280026255	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	2.43565961964127	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.42763030383098	bayes_pls_golite062009
hydrolase activity	1.52360037846731	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.35667718087017	bayes_pls_golite062009
metal ion transmembrane transporter activity	1.118846682794	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
catalytic activity	0.427775057748038	bayes_pls_golite062009
sugar transmembrane transporter activity	0.149318428666465	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.0291867591868584	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: