YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350752, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	471 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350752, gi|....

Description	E-value	Query Range	Subject Range
gi\|71488678, gi\|... - gi\|71545481\|ref\|ZP_00666412.1\| RND efflux system, outer membrane lipoprotein, NodT [Syntrophobacter ...	308.0	[0..23]	[449..263]
gi\|84357726 - gi\|84357726\|ref\|ZP_00982537.1\| COG0841: Cation/multidrug efflux pump [Burkholderia cenocepacia PC184...	283.0	[0..17]	[448..1108]
gi\|67981567, gi\|... - gi\|95930203\|ref\|ZP_01312941.1\| Hydrophobe/amphiphile efflux-1 HAE1 [Desulfuromonas acetoxidans DSM 6...	278.0	[0..23]	[454..1085]
gi\|85858611, gi\|... - gi\|85858611\|ref\|YP_460813.1\| type I secretion outer membrane protein [Syntrophus aciditrophicus SB],...	278.0	[0..22]	[448..85]
gi\|46446186, gi\|... - gi\|46446186\|ref\|YP_007551.1\| putative outer membrane protein, componenet of multidrug efflux systems...	276.0	[0..17]	[448..38]
gi\|83652156, gi\|... - gi\|83718331\|ref\|YP_439482.1\| RND efflux system outer membrane lipoprotein [Burkholderia thailandensi...	275.0	[0..17]	[465..92]
gi\|53753478, gi\|... - gi\|54293646\|ref\|YP_126061.1\| hypothetical protein lpl0699 [Legionella pneumophila str. Lens], gi\|537...	275.0	[0..21]	[457..51]
gi\|91785070, gi\|... - gi\|91785070\|ref\|YP_560276.1\| RND efflux system outer membrane lipoprotein [Burkholderia xenovorans L...	274.0	[0..17]	[465..68]
gi\|94731686, gi\|... - gi\|94987437\|ref\|YP_595370.1\| outer membrane efflux protein [Lawsonia intracellularis PHE/MN1-00], gi...	273.0	[0..19]	[449..44]

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Predicted Domain #1

Region A:
Residues: [1-471]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLVRRQFQ CSKIAVLLSA ILLPLSAQSQ TLEQAVAHTL DTNPDLRVAF NRFKAREEQV  60
   61 NQAIAGYMPT VDLTGGYGYE QTDSVSTRRR KNVGDVDSNG VAELNRGEFG ISLKQMLFDG 120
  121 FYTSSEVDRY SFEASADQWA LLAAAEDMAL DVSKAYLNYL RTDEVLKLAE KNLNSHKEIY 180
  181 DQIKQRTDSG LGSTADLSQI SGRLARANAN VISARNNLLD AKAQFVRVVA ADPVDLIQPV 240
  241 PDADMLPKDL NSSIADAEKN HPILKSAAND IRAAENERSS TQANYYPQVS LELNGSWNND 300
  301 VGGEDGVSAI ASQNVGGYSN DIVAMVRVKY NLFAGGKDLA REKESAYKLS EAKEIRQRAQ 360
  361 REVVEGVNLA WNAYEMLAPQ KQYIRDHVIA AKDTQSAYAQ QFNLGQRSLL DLLDTENELF 420
  421 EARKDYLQAE YDETIAKYRV LNSTGRLLDS LKVTRPEAWR GERNYEGGAN Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.39794
Match:	1wp1A
Description:	Crystal structure of the drug-discharge outer membrane protein, OprM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	4.2806100513341	bayes_pls_golite062009
transmembrane transporter activity	2.91628575119399	bayes_pls_golite062009
porin activity	0.960340223825989	bayes_pls_golite062009
protein binding	0.733559018445359	bayes_pls_golite062009
binding	0.666039242029224	bayes_pls_golite062009
drug transmembrane transporter activity	0.40205797321583	bayes_pls_golite062009
efflux transmembrane transporter activity	0.381147202210091	bayes_pls_golite062009
	0.32815814791941	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: