YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375773, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375773, gi|....

Description	E-value	Query Range	Subject Range
gi\|67548364, gi\|... - gi\|67548364\|ref\|ZP_00426254.1\| Binding-protein-dependent transport systems inner membrane component ...	172.0	[0..29]	[289..536]
gi\|23100928, gi\|... - gi\|23100928\|ref\|NP_694395.1\| ABC transporter permease [Oceanobacillus iheyensis HTE831], gi\|22779163...	158.0	[0..53]	[280..194]
gi\|56420657, gi\|... - gi\|56420657\|ref\|YP_147975.1\| ABC transporter (permease) [Geobacillus kaustophilus HTA426], gi\|563804...	153.0	[0..51]	[286..183]
gi\|89359528, gi\|... - gi\|89359528\|ref\|ZP_01197349.1\| similar to ABC-type spermidine/putrescine transport system permease c...	150.0	[0..1]	[284..289]
gi\|42522758, gi\|... - gi\|42522758\|ref\|NP_968138.1\| maltose/maltodextrin transport permease homologue [Bdellovibrio bacteri...	149.0	[0..6]	[277..444]
gi\|10173861, gi\|... - gi\|15613808\|ref\|NP_242111.1\| hypothetical protein BH1245 [Bacillus halodurans C-125], gi\|10173861\|db... gi\|25489748 - pir\|\|E83805 hypothetical protein BH1245 [imported] - Bacillus halodurans (strain C-125)	147.0	[0..53]	[280..196]
gi\|115373087, gi... - gi\|115373087\|ref\|ZP_01460389.1\| maltose transport system permease protein MalF [Stigmatella aurantia...	141.0	[0..3]	[286..348]
gi\|146297489, gi... - gi\|82499090\|ref\|ZP_00884541.1\| ABC transporter (permease) [Caldicellulosiruptor saccharolyticus DSM ...	138.0	[0..51]	[284..178]
gi\|8744950, gi\|2... - gi\|8744950\|emb\|CAB95276.1\| putative sugar transport integral membrane protein [Streptomyces coelicol...	136.0	[0..3]	[280..29]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLLLKKSGD LIETSFKILF LCCAMAGVIS VSTIGWFVFS EGLPALKEAG VISFVLGKEW  60
   61 LPPALYGILP MIIASLISTT GAIIIGVPIA IFTAIFLAEL APKWLANLVR PAVELLAGIP 120
  121 SVVYGFFGLV IIVPGIEAIF DIPAGNTLLA GIIVLAIMIL PTIITISETS LRALPSVYKE 180
  181 GALALGASHI YTIFNVLVPA AKSGILTGVI LGVARAIGET MAIIMVMGNA PAMPGSLLEP 240
  241 ARTLTANIAM EMSYATGIHS SALYATGIVL LAFIVLLNGS LLYLNRKKAY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.39794
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
ATPase activity, coupled to transmembrane movement of substances	7.98776119907207	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	7.98726234902655	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	7.98726234902655	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	7.97287417765536	bayes_pls_golite062009
primary active transmembrane transporter activity	7.96249144456164	bayes_pls_golite062009
active transmembrane transporter activity	7.8678894318504	bayes_pls_golite062009
ATPase activity, coupled	7.29227234008448	bayes_pls_golite062009
ATPase activity	6.94069583578738	bayes_pls_golite062009
nucleoside-triphosphatase activity	6.59903874016214	bayes_pls_golite062009
pyrophosphatase activity	6.52169210550643	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	6.50067149801529	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	6.5003333073452	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	5.79272438461837	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.78398318541319	bayes_pls_golite062009
ion transmembrane transporter activity	5.07829337366931	bayes_pls_golite062009
hydrolase activity	4.78607811092587	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	4.67147916955159	bayes_pls_golite062009
anion transmembrane transporter activity	4.52297088726018	bayes_pls_golite062009
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	4.26804338154829	bayes_pls_golite062009
substrate-specific transporter activity	3.91409799494188	bayes_pls_golite062009
cation transmembrane transporter activity	3.91336745536039	bayes_pls_golite062009
sulfate transmembrane transporter activity	2.86272063186416	bayes_pls_golite062009
sugar transmembrane transporter activity	2.67115360425434	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.42763030383098	bayes_pls_golite062009
maltose-transporting ATPase activity	2.14010989459818	bayes_pls_golite062009
oligosaccharide-transporting ATPase activity	2.14010989459818	bayes_pls_golite062009
oligosaccharide transmembrane transporter activity	2.14010989459818	bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
maltose transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
disaccharide transmembrane transporter activity	2.09224118357857	bayes_pls_golite062009
glucoside transmembrane transporter activity	2.04706530621258	bayes_pls_golite062009
metal ion transmembrane transporter activity	1.98807799932923	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.59729360434602	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	0.826183195102835	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	0.826183195102835	bayes_pls_golite062009
iron ion transmembrane transporter activity	0.75761030349885	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
catalytic activity	0.427775057748038	bayes_pls_golite062009
maltooligosaccharide-importing ATPase activity	0.16532450344344	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.0291867591868584	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: