YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375772, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375772, gi|....

Description	E-value	Query Range	Subject Range
gi\|67548364, gi\|... - gi\|67548364\|ref\|ZP_00426254.1\| Binding-protein-dependent transport systems inner membrane component ...	163.0	[0..24]	[278..536]
gi\|23100928, gi\|... - gi\|23100928\|ref\|NP_694395.1\| ABC transporter permease [Oceanobacillus iheyensis HTE831], gi\|22779163...	153.0	[0..44]	[273..194]
gi\|89359528, gi\|... - gi\|89359528\|ref\|ZP_01197349.1\| similar to ABC-type spermidine/putrescine transport system permease c...	149.0	[0..5]	[272..301]
gi\|56420657, gi\|... - gi\|56420657\|ref\|YP_147975.1\| ABC transporter (permease) [Geobacillus kaustophilus HTA426], gi\|563804...	148.0	[0..36]	[275..177]
gi\|10173861, gi\|... - gi\|15613808\|ref\|NP_242111.1\| hypothetical protein BH1245 [Bacillus halodurans C-125], gi\|10173861\|db... gi\|25489748 - pir\|\|E83805 hypothetical protein BH1245 [imported] - Bacillus halodurans (strain C-125)	142.0	[0..44]	[273..196]
gi\|75700193, gi\|... - gi\|75906468\|ref\|YP_320764.1\| molybdate ABC transporter permease [Anabaena variabilis ATCC 29413], gi...	142.0	[0..60]	[277..5]
gi\|49531644, gi\|... - gi\|50085668\|ref\|YP_047178.1\| sulfate ABC transporter membrane protein [Acinetobacter sp. ADP1], gi\|4...	141.0	[0..5]	[274..32]
gi\|85837480, gi\|... - gi\|86144581\|ref\|ZP_01062913.1\| phosphate ABC transporter, permease protein [Vibrio sp. MED222], gi\|8...	139.0	[0..2]	[277..28]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTRKRKDRL LYCAIWGSAG ITILFLLWVV WHILANGLSH VSWEFITGAY TRIGEISGIW  60
   61 AMIVSTVYMV LLSLTFAAPI GIMTAIYLTE YASPVSKVVR VIRFCTESLA GIPSIVYGLF 120
  121 GMTFFVTQLG LGFSILSGAL TLAMLILPVI IRTTEEALMS VPMSYREGGY ALGCSKIYII 180
  181 WRLILPSALP GIVNSIILST GRVVGESAPV FLTAGMVTQI PESVMDSGRT LTVHLYKLTQ 240
  241 ELFTQNEWDQ AYATATILIV LVLMLNLATK LIATKLNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	5.78398318541319	bayes_pls_golite062009
ion transmembrane transporter activity	5.07829337366931	bayes_pls_golite062009
anion transmembrane transporter activity	4.52297088726018	bayes_pls_golite062009
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	4.26804338154829	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	4.1506718364112	bayes_pls_golite062009
primary active transmembrane transporter activity	4.00217276617164	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	3.99891866007599	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.98211391811154	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	3.97908815673888	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	3.97858487787769	bayes_pls_golite062009
substrate-specific transporter activity	3.91409799494188	bayes_pls_golite062009
cation transmembrane transporter activity	3.91336745536039	bayes_pls_golite062009
active transmembrane transporter activity	3.89128503869358	bayes_pls_golite062009
ATPase activity, coupled	3.32937863234927	bayes_pls_golite062009
ATPase activity	3.08226330066871	bayes_pls_golite062009
nucleoside-triphosphatase activity	3.00619776756793	bayes_pls_golite062009
pyrophosphatase activity	2.93295939960055	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.91418221359376	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.91133868200651	bayes_pls_golite062009
sulfate transmembrane transporter activity	2.86272063186416	bayes_pls_golite062009
sulfate transmembrane-transporting ATPase activity	2.7061570950411	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.42763030383098	bayes_pls_golite062009
metal ion transmembrane transporter activity	1.98807799932923	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.59729360434602	bayes_pls_golite062009
hydrolase activity	1.57867403354317	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
molybdate transmembrane-transporting ATPase activity	0.826183195102835	bayes_pls_golite062009
molybdate ion transmembrane transporter activity	0.826183195102835	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
catalytic activity	0.427775057748038	bayes_pls_golite062009
sugar transmembrane transporter activity	0.149318428666465	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.0291867591868584	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: