YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350538, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	549 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350538, gi|....

Description	E-value	Query Range	Subject Range
gi\|83365388, gi\|... - gi\|83372916\|ref\|ZP_00917695.1\| ATPas [Rhodobacter sphaeroides ATCC 17029], gi\|83365388\|gb\|EAP68875.1...	459.0	[0..1]	[549..332]
MSBA_SYNAS - Lipid A export ATP-binding/permease protein MsbA OS=Syntrophus aciditrophicus (strain SB) GN=msbA PE...	454.0	[0..2]	[548..22]
Y288_THEMA - Uncharacterized ABC transporter ATP-binding protein TM_0288 OS=Thermotoga maritima GN=TM_0288 PE=3 S... Y288_THEMA - Uncharacterized ABC transporter ATP-binding protein TM_0288 OS=Thermotoga maritima (strain ATCC 4358...	449.0	[0..1]	[549..25]
gi\|87123261, gi\|... - gi\|87123261\|ref\|ZP_01079112.1\| putative multidrug efflux ABC transporter [Synechococcus sp. RS9917],...	447.0	[0..3]	[547..416]
gi\|81300714, gi\|... - gi\|81300714\|ref\|YP_400922.1\| cyclic nucleotide-binding domain-containing protein [Synechococcus elon...	446.0	[0..1]	[549..429]
gi\|56687158, gi\|... - gi\|56752199\|ref\|YP_172900.1\| toxin secretion ABC transporter ATP-binding protein [Synechococcus elon...	446.0	[0..1]	[549..429]
gi\|75907411, gi\|... - gi\|75907411\|ref\|YP_321707.1\| cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters [Anab...	445.0	[0..1]	[548..433]
gi\|33864729, gi\|... - gi\|33864729\|ref\|NP_896288.1\| putative multidrug efflux ABC transporter [Synechococcus sp. WH 8102], ...	444.0	[0..3]	[548..404]
gi\|1673392, gi\|7... - pir\|\|G69815 ABC transporter (ATP-binding protein) homolog ygaD - Bacillus subtilis, gi\|1673392\|emb\|C... gi\|16077935, gi\|... - gi\|2633192\|emb\|CAB12697.1\| putative ABC transporter (ATP-binding protein) [Bacillus subtilis subsp. ...	444.0	[0..1]	[549..13]
gi\|91081617 - gi\|91081617\|ref\|XP_966724.1\| PREDICTED: similar to AGAP002717-PA [Tribolium castaneum]	442.0	[0..1]	[548..60]

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Predicted Domain #1

Region A:
Residues: [1-549]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIESLRLLAQ HKSFTELLLS STLINVLSLA LPFTMLQIYD RILPNEAYGT ASVLAIGVGI  60
   61 AILLELVLRY TRSWLLALNA SNYELQTTAQ FVDRLMKADY HHVEQLGSGK ILHGITSIAT 120
  121 MREIYSGQAA VALMDFPFVI IFLALVAYIG GPLVFIPILV WGIAGIGVWQ IGKKLSVATR 180
  181 ELAISDDERT RLLILVLSGL TTAKSLALES RITYAYKKIN YQRLAQQNEV DWLSSQLQEW 240
  241 IQGASQATTL ALVLIGCFEV LNGDLTTGGL AACSILAGRA VAPLSAIGSL KAKFVTAQSA 300
  301 MQDVNEIIAS PPESLNGTQV YQQKLPSGPI QFEQVSAQQT GAKLKQINLT IPAGSLVTVT 360
  361 SNPLTHASLL LSTVGGYHQV TEGAIKIDSI PLTEHDPLEY RQSISYVSPW ATLLAGSILD 420
  421 NLTLFRHERE AYAMVLADKL GLSATIAQLP AGYQTLVGNN DSQMLNKGAI KLIAIVRALA 480
  481 QSPSILLLDE PMVSLDADSQ QRLLALLLEL KNHITLIVAS YFTEIAAISD YRIHISSQGD 540
  541 ATMSSNGEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	120.0
Match:	2hydA
Description:	No description for 2hydA was found.

Predicted functions:

Term	Confidence	Notes
transporter activity	2.16348856338652	bayes_pls_golite062009
transmembrane transporter activity	1.56557995183783	bayes_pls_golite062009
substrate-specific transporter activity	1.30484188503146	bayes_pls_golite062009
lipid transporter activity	0.71867095828459	bayes_pls_golite062009
binding	0.480644688089444	bayes_pls_golite062009
active transmembrane transporter activity	0.26128259627891	bayes_pls_golite062009
catalytic activity	0.195870175969239	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.18175860087446	bayes_pls_golite062009
primary active transmembrane transporter activity	0.17855967742408	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.16810258283338	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.16810258283338	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.16755234225609	bayes_pls_golite062009
guanyl nucleotide binding	0.0957699058789503	bayes_pls_golite062009
guanyl ribonucleotide binding	0.09182767935661	bayes_pls_golite062009
GTP binding	0.0819139864212004	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: