Protein: | gi|24374999, gi|... |
Organism: | Shewanella oneidensis MR-1 |
Length: | 476 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374999, gi|....
Description | E-value | Query Range |
Subject Range |
|
264.0 | [0..65] | [476..1] |
|
264.0 | [0..65] | [476..1] |
|
263.0 | [0..65] | [476..1] |
|
259.0 | [0..65] | [476..1] |
|
258.0 | [0..66] | [452..1] |
|
257.0 | [0..65] | [476..1] |
|
256.0 | [0..65] | [476..1] |
|
254.0 | [0..67] | [470..36] |
|
250.0 | [0..69] | [468..7] |
|
246.0 | [0..64] | [458..1] |
Region A: Residues: [1-88] |
1 11 21 31 41 51 | | | | | | 1 MFIKLSQNIT YSSVQNLLTG SFYNIYYRSV HNIFYQSVFI DFDRVPISDV CLKRDKCLPH 60 61 EDCKMISNPT LRTLMLTTVA AFVLSACG |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [89-476] |
1 11 21 31 41 51 | | | | | | 1 EPEVLQGQAP AAPKVDVAQV LQERVTEWDE FTGRLQAPES VTLVPRVSGY IASVNFKEGA 60 61 LVKKGDVLFR IDASVFEAEV ARLKADLASA LSADQLATND LERARKLFVQ KAVSAELLDT 120 121 RESNKRQTTA AVASVKAALL RAELDLDYTQ VRAPIDGRAS YANVTAGNYV SAGQSVLTHL 180 181 VSTASMYAYF DVDEQTYLKY VKLTAEKKRN DPRAGDNPVY MALANEREYQ HVGIVDFVDN 240 241 AMDRQTGTIR VRATFSNEDN SLLPGLFARL RTAGSSAYDG ILIDDKAVGT DLNNKFVLVV 300 301 ANDGTVEYRG VTLGEKVQGL RIVKQGLAAN DKIVVNGMQR VRPKMQIEPL LVDMADSEQL 360 361 EALRHAQLML DKNQENLTTQ AVEVASRG |
Detection Method: | |
Confidence: | 55.522879 |
Match: | 1t5eA |
Description: | The structure of MexA |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
drug transmembrane transporter activity | 6.72943251269963 | bayes_pls_golite062009 |
6.35210689530056 | bayes_pls_golite062009 | |
6.27508108329198 | bayes_pls_golite062009 | |
transporter activity | 4.64829294279324 | bayes_pls_golite062009 |
transmembrane transporter activity | 3.3430410220484 | bayes_pls_golite062009 |
protein transporter activity | 2.78337364594901 | bayes_pls_golite062009 |
substrate-specific transporter activity | 2.32388774487807 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 0.892013812755237 | bayes_pls_golite062009 |
metal ion transmembrane transporter activity | 0.729251657794536 | bayes_pls_golite062009 |
ion transmembrane transporter activity | 0.696350598512404 | bayes_pls_golite062009 |
cation transmembrane transporter activity | 0.560994844134224 | bayes_pls_golite062009 |