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Protein Overview: gi|24374999, gi|...

General Information:
Name(s) found: gi|24374999 [NCBI NR]
gi|24349731 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374999|ref|NP_719042.1| RND multidrug efflux membrane fusion protein MexE [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349731|gb|AAN56486.1|AE015785_9 RND multidrug efflux membrane fusion protein MexE [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 476 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: drug transmembrane transport [ISSLink to PubMed article]
    cellular membrane fusion [ISSLink to PubMed article]
    response to drug [ISSLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIKLSQNIT YSSVQNLLTG SFYNIYYRSV HNIFYQSVFI DFDRVPISDV CLKRDKCLPH  60
   61 EDCKMISNPT LRTLMLTTVA AFVLSACGEP EVLQGQAPAA PKVDVAQVLQ ERVTEWDEFT 120
  121 GRLQAPESVT LVPRVSGYIA SVNFKEGALV KKGDVLFRID ASVFEAEVAR LKADLASALS 180
  181 ADQLATNDLE RARKLFVQKA VSAELLDTRE SNKRQTTAAV ASVKAALLRA ELDLDYTQVR 240
  241 APIDGRASYA NVTAGNYVSA GQSVLTHLVS TASMYAYFDV DEQTYLKYVK LTAEKKRNDP 300
  301 RAGDNPVYMA LANEREYQHV GIVDFVDNAM DRQTGTIRVR ATFSNEDNSL LPGLFARLRT 360
  361 AGSSAYDGIL IDDKAVGTDL NNKFVLVVAN DGTVEYRGVT LGEKVQGLRI VKQGLAANDK 420
  421 IVVNGMQRVR PKMQIEPLLV DMADSEQLEA LRHAQLMLDK NQENLTTQAV EVASRG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] deduced N/A No confident structure predictions are available.
    2 View Details [89..476] PSI-BLAST 55.522879 The structure of MexA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • drug transmembrane transporter activity
    		•  6.72943251269963 bayes_pls_golite062009
    		• 6.35210689530056 bayes_pls_golite062009
    		• 6.27508108329198 bayes_pls_golite062009
  • transporter activity
    		•  4.64829294279324 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.3430410220484 bayes_pls_golite062009
  • protein transporter activity
    		•  2.78337364594901 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.32388774487807 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.892013812755237 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  0.729251657794536 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.696350598512404 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.560994844134224 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle