Protein: | gi|24349287, gi|... |
Organism: | Shewanella oneidensis MR-1 |
Length: | 459 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349287, gi|....
Description | E-value | Query Range |
Subject Range |
|
362.0 | [0..7] | [447..1] |
|
360.0 | [0..12] | [453..6] |
|
359.0 | [0..11] | [453..4] |
|
358.0 | [0..10] | [453..2] |
|
356.0 | [0..11] | [453..5] |
|
354.0 | [0..12] | [453..6] |
|
354.0 | [0..9] | [451..2] |
|
353.0 | [0..10] | [453..2] |
Region A: Residues: [1-393] |
1 11 21 31 41 51 | | | | | | 1 MSVPNSIQDY SVLIIDDEPH IGTVLVQLFE LEGIKAFAAT DPKGIAKLLD RDWAGVVISD 60 61 VNMPQLDGIS LMQQIREQDA DLPVVLLTGF GDIAMAVNAL KQGAYDFLEK PFNNEHMLDV 120 121 VKRALDKRSL TLENRKLKKE LESHNVPGPR ILGHSVGIQR MRHIIDQVID TPADVLIEGE 180 181 TGTGKELVAR YLHDHSNRNQ ANFVAINCGA IPENLIESEL FGAEAGAFTG VDKLRIGKFE 240 241 YANGGTLFLD EIESTPLSLQ VKLLRVLEDR KVERLGSNKS IHLDIRVIAA TKVDLKSLCD 300 301 TGQFRQDLLY RLNLVTVPIP PLRDRREDIP LLFLHFARMA SARYHKALIA LNAEQNAILT 360 361 SHDWPGNVRE LRNLAERYVL LGGEAAFAGT LGN |
Detection Method: | |
Confidence: | 76.0 |
Match: | 1ny5A |
Description: | Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
protein histidine kinase activity | 2.35011582062573 | bayes_pls_golite062009 |
two-component sensor activity | 2.32303301074957 | bayes_pls_golite062009 |
phosphotransferase activity, nitrogenous group as acceptor | 2.28838869071567 | bayes_pls_golite062009 |
nucleoside-triphosphatase activity | 1.95073642969863 | bayes_pls_golite062009 |
pyrophosphatase activity | 1.91141407779641 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides | 1.9017593265179 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 1.90014393273511 | bayes_pls_golite062009 |
carboxylic acid transmembrane transporter activity | 1.82370030183942 | bayes_pls_golite062009 |
organic acid transmembrane transporter activity | 1.79922369980544 | bayes_pls_golite062009 |
transporter activity | 1.55572428045529 | bayes_pls_golite062009 |
amino acid transmembrane transporter activity | 1.52217781539459 | bayes_pls_golite062009 |
ATPase activity | 1.48474288797022 | bayes_pls_golite062009 |
two-component response regulator activity | 1.45919623810582 | bayes_pls_golite062009 |
amine transmembrane transporter activity | 1.4031990658196 | bayes_pls_golite062009 |
transmembrane transporter activity | 1.38483976298883 | bayes_pls_golite062009 |
ATPase activity, coupled | 1.37457738689583 | bayes_pls_golite062009 |
catalytic activity | 1.37148167194523 | bayes_pls_golite062009 |
binding | 1.30574971150356 | bayes_pls_golite062009 |
active transmembrane transporter activity | 1.24278046928678 | bayes_pls_golite062009 |
P-P-bond-hydrolysis-driven transmembrane transporter activity | 1.2014318795788 | bayes_pls_golite062009 |
primary active transmembrane transporter activity | 1.19670408144267 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 1.17063957238561 | bayes_pls_golite062009 |
ATPase activity, coupled to movement of substances | 1.16918853509059 | bayes_pls_golite062009 |
ATPase activity, coupled to transmembrane movement of substances | 1.16885789920943 | bayes_pls_golite062009 |
hydrolase activity | 1.09839981963412 | bayes_pls_golite062009 |
nucleic acid binding | 0.900561861643259 | bayes_pls_golite062009 |
transcription regulator activity | 0.530058973650498 | bayes_pls_golite062009 |
purine ribonucleotide binding | 0.5127850474754 | bayes_pls_golite062009 |
ribonucleotide binding | 0.51230334374838 | bayes_pls_golite062009 |
purine nucleotide binding | 0.50688037036449 | bayes_pls_golite062009 |
protein binding | 0.502813311049029 | bayes_pls_golite062009 |
nucleotide binding | 0.49473184426584 | bayes_pls_golite062009 |
DNA binding | 0.460315660888175 | bayes_pls_golite062009 |
branched-chain aliphatic amino acid transmembrane transporter activity | 0.32754685224555 | bayes_pls_golite062009 |
amine-transporting ATPase activity | 0.128277449580549 | bayes_pls_golite062009 |
amino acid-transporting ATPase activity | 0.109938795198381 | bayes_pls_golite062009 |
substrate-specific transporter activity | 0.0838665746103899 | bayes_pls_golite062009 |
Region A: Residues: [394-459] |
1 11 21 31 41 51 | | | | | | 1 APSLHTSMSL LQRVEFFERV LIEEALSHNK GSIKLTMEQL ELPRKTLYDK MRKYDLDRKQ 60 61 YINADE |
Detection Method: | |
Confidence: | 74.69897 |
Match: | 1ojlA |
Description: | Crystal structure of a sigma54-activator suggests the mechanism for the conformational switch necessary for sigma54 binding |
Matching Structure (courtesy of the PDB): |