YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348817, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	461 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348817, gi|....

Description	E-value	Query Range	Subject Range
gi\|196021976, gi... - gi\|196047227\|ref\|ZP_03114443.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacillu... gi\|196034848, gi... - gi\|196034848\|ref\|ZP_03102255.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacillu... gi\|228842947, gi... - gi\|228916760\|ref\|ZP_04080325.1\| Adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacillu... gi\|225866105, gi... - gi\|225866105\|ref\|YP_002751483.1\| adenosylmethionine-8-amino-7-oxononanoate transaminase [Bacillus ce... gi\|49480907, gi\|... - gi\|49480907\|ref\|YP_038180.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Bacillus thuri...	391.0	[0..2]	[434..14]
gi\|52141374, gi\|... - gi\|52141374\|ref\|YP_085455.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Bacillus cereu...	391.0	[0..2]	[434..14]
gi\|221241627, gi... - gi\|222097569\|ref\|YP_002531626.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacill... gi\|217961613, gi... - gi\|217961613\|ref\|YP_002340183.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacill... gi\|206745485, gi... - gi\|206976289\|ref\|ZP_03237197.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacillu... gi\|42739163, gi\|... - gi\|42783235\|ref\|NP_980482.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Bacillus cereu...	390.0	[0..2]	[434..14]
gi\|47555170, gi\|... - gi\|47568180\|ref\|ZP_00238884.1\| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Bacillus ...	388.0	[0..2]	[434..17]
gi\|54309497, gi\|... - gi\|54309497\|ref\|YP_130517.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Photobacterium...	388.0	[0..2]	[429..5]
gi\|65321512 - gi\|65321512\|ref\|ZP_00394471.1\| COG0161: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [...	388.0	[0..2]	[434..17]
gi\|177652596, gi... - gi\|177652596\|ref\|ZP_02935012.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacillu... gi\|190563149, gi... - gi\|190566230\|ref\|ZP_03019149.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacillu... gi\|170687280, gi... - gi\|170687280\|ref\|ZP_02878498.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacillu... gi\|254758214 - gi\|254758214\|ref\|ZP_05210241.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Bacillus an... gi\|170129271, gi... - gi\|170705731\|ref\|ZP_02896194.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacillu... gi\|167633719, gi... - gi\|167633719\|ref\|ZP_02392043.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacillu... gi\|167639395, gi... - gi\|167639395\|ref\|ZP_02397666.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacillu... gi\|165871199, gi... - gi\|165871199\|ref\|ZP_02215849.1\| adenosylmethionine--8-amino-7-oxononanoate aminotransferase [Bacillu... gi\|49187026, gi\|... - gi\|49187026\|ref\|YP_030278.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Bacillus anthr... gi\|47504786, gi\|... - gi\|47529638\|ref\|YP_020987.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Bacillus anthr... gi\|30264197, gi\|... - gi\|30264197\|ref\|NP_846574.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Bacillus anthr... gi\|21402175 - ref\|NP_658160.1\| aminotran_3, Aminotransferase class-III [Bacillus anthracis str. A2012] gi\|229266373, gi... - gi\|229601965\|ref\|YP_002868420.1\| adenosylmethionine-8-amino-7-oxononanoate transaminase [Bacillus an... gi\|254683888 - gi\|254683888\|ref\|ZP_05147748.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Bacillus an... gi\|227003784, gi... - gi\|227816898\|ref\|YP_002816907.1\| adenosylmethionine-8-amino-7-oxononanoate transaminase [Bacillus an... gi\|254744125 - gi\|254744125\|ref\|ZP_05201808.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Bacillus an... gi\|254754095 - gi\|254754095\|ref\|ZP_05206130.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Bacillus an... gi\|254721723 - gi\|254721723\|ref\|ZP_05183512.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Bacillus an... gi\|254736235 - gi\|254736235\|ref\|ZP_05193941.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Bacillus an...	388.0	[0..2]	[434..14]
gi\|91201906 - gi\|91201906\|emb\|CAJ74966.1\| similar to 7,8-diaminopelargonic acid synthase [Candidatus Kuenenia stut...	387.0	[0..1]	[434..5]
gi\|90324428, gi\|... - gi\|90414520\|ref\|ZP_01222495.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Photobacteri...	387.0	[0..2]	[429..5]
gi\|90439149, gi\|... - gi\|90579575\|ref\|ZP_01235384.1\| adenosylmethionine--8-amino-7-oxononanoate transaminase [Vibrio angus...	384.0	[0..3]	[431..5]

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Predicted Domain #1

Region A:
Residues: [1-461]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNLLDFDFD SAHIWHPYTS MTRALPVFGV HSAQGCELEL VDGRKLIDGT SSWWACVHGY  60
   61 GHPAILTAME QQLHQLSHVM FGGITHEPAI ELCKKLLAMT CEPLTKVFLC DSGSIAVEVA 120
  121 IKMALQYWQG QDLPLAQKAQ KQRILTVKKG YHGDTFAAMS VCDPEGGMHT MFGEAVIKQC 180
  181 FVDAPQTPFG ESLHQDDLAP MQRILREQHQ DIAAVIIEPI MQGAGGMRFY SSEYLRGLRA 240
  241 LCDEYNVLLI LDEIATGFGR TGKLFAYEHT DITPDILCLG KALTGGYISL AATLCTDNVA 300
  301 QGISQSPAGV FMHGPTFMGN PLACAAACAS LDLINQQEWP AQVAAIEQQM QRELADAIDI 360
  361 PSVKAVRVLG AVGVLEMHQA VNTAALQQQF VDLGVWVRPF ANLIYIMPPY VISSAQLSQL 420
  421 TQAMKQVAAT ITPPNITPPN TTPELASQGW HTDQNISISH G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.221849
Match:	1s08A
Description:	Crystal Structure of the D147N Mutant of 7,8-Diaminopelargonic Acid Synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
4-aminobutyrate transaminase activity	3.63797881096751	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	3.359406422625	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
5-aminolevulinate synthase activity	1.85905571238884	bayes_pls_golite062009
adenosylmethionine-8-amino-7-oxononanoate transaminase activity	1.74778109525713	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	1.63055151623667	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	1.63055151623667	bayes_pls_golite062009
transferase activity	1.44093490824786	bayes_pls_golite062009
N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	1.4383564662931	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.19150094103499	bayes_pls_golite062009
succinate-semialdehyde dehydrogenase binding	0.78144409237642	bayes_pls_golite062009
carbon-sulfur lyase activity	0.698312655247044	bayes_pls_golite062009
intramolecular transferase activity, transferring amino groups	0.659071155545801	bayes_pls_golite062009
N-succinyltransferase activity	0.52897097514616	bayes_pls_golite062009
binding	0.49769115245722	bayes_pls_golite062009
ornithine-oxo-acid transaminase activity	0.311107335626334	bayes_pls_golite062009
N-acyltransferase activity	0.2609065149092	bayes_pls_golite062009
kynureninase activity	0.242752584041108	bayes_pls_golite062009
nucleic acid binding	0.186646089509162	bayes_pls_golite062009
vitamin B6 binding	0.16957228630576	bayes_pls_golite062009
pyridoxal phosphate binding	0.16957228630576	bayes_pls_golite062009
cystathionine beta-lyase activity	0.15938456446406	bayes_pls_golite062009
sulfurtransferase activity	0.0450490929307473	bayes_pls_golite062009
DNA binding	0.0281750086102144	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: